ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DADA_PHOLL (Q7N3Z6) D-amino acid dehydrogenase small subunit (EC... 30 1.8
2LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12... 28 4.0
3NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 pr... 27 9.0

>DADA_PHOLL (Q7N3Z6) D-amino acid dehydrogenase small subunit (EC 1.4.99.1)|
          Length = 436

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 236 TKTHFWVSWCHLAPMWLELYIPTGHHCRTNVFRTTGHHCRRW 111
           T+THFW     + P    +  PT +H   N++  TGH    W
Sbjct: 346 TQTHFWTGLRPMTPDGTPIVGPTEYH---NLYLNTGHGTLGW 384



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>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1581

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 185 ELYIPTGH--HCRTNVFRTTGHHCRR 114
           ELY  TGH  HC+     TTG HC R
Sbjct: 350 ELYRSTGHGGHCQRCRDHTTGPHCER 375



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>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch|
           1) (hN1) (Translocation-associated notch protein TAN-1)
           [Contains: Notch 1 extracellular truncation; Notch 1
           intracellular domain]
          Length = 2556

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 170 TGHHCRTNVFRTTGHHCR 117
           TGHHC TN+   +   CR
Sbjct: 596 TGHHCETNINECSSQPCR 613


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,618,201
Number of Sequences: 219361
Number of extensions: 1136566
Number of successful extensions: 2240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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