ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05h09 |
|---|---|
| Clone Library Name | barley_pub |
>T3RH_HAEIN (P44105) Putative type III restriction-modification system HindVIP| enzyme res (EC 3.1.21.5) Length = 514 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 156 FSLKEMQRTNYTKILFTKSSCGGKRKKDSRTLLKIWRFHKMCIIY 290 F LKE + YTK + SS GK+++ LL W H++ + Y Sbjct: 284 FGLKEFLQKGYTKEINLVSSTLGKKERVLHALLFAWYRHQIALKY 328
>GALC_MACMU (O02791) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 290 VDYAHLMESPNFQ*CSGIFFPFSSATGFGEEYFCIVCALHLF*REVTFA 144 VDY E+PNF +G+F F++ GE +F + L+ R +T+A Sbjct: 480 VDYPFFSEAPNFADQTGVFEYFTNMEDPGEHHFTLRQVLNQ--RPITWA 526
>GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 290 VDYAHLMESPNFQ*CSGIFFPFSSATGFGEEYFCIVCALHLF*REVTFA 144 VDY E+PNF +G+F F++ GE +F + L+ R +T+A Sbjct: 480 VDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQ--RPITWA 526
>LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1| Length = 965 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 173 ATHKLYKNTLHQIQLRRKKEKRFQNITEN 259 A +L K L Q++LR+K E+ FQ++ +N Sbjct: 861 AREELQKLLLEQMELRKKLEREFQSLKDN 889
>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1| Length = 964 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 173 ATHKLYKNTLHQIQLRRKKEKRFQNITEN 259 A +L K L Q++LR+K E+ FQ++ +N Sbjct: 860 AREELQKLLLEQMELRKKLEREFQSLKDN 888
>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional| corepressor Corl1) Length = 964 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 173 ATHKLYKNTLHQIQLRRKKEKRFQNITEN 259 A +L K L Q++LR+K E+ FQ++ +N Sbjct: 860 AREELQKLLLEQMELRKKLEREFQSLKDN 888
>G109A_HUMAN (Q8TDS4) Nicotinic acid receptor 1 (G-protein coupled receptor| 109A) (G-protein coupled receptor HM74A) Length = 363 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 273 YGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLL 163 +G+ + W +F F L++W R+FL++L VA L Sbjct: 40 FGLLGNGLALW-IFCFHLKSWKSSRIFLFNLAVADFL 75
>G109B_HUMAN (P49019) Nicotinic acid receptor 2 (G-protein coupled receptor| 109B) (G-protein coupled receptor HM74) (G-protein coupled receptor HM74B) Length = 387 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 273 YGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLL 163 +G+ + W +F F L++W R+FL++L VA L Sbjct: 40 FGLLGNGLALW-IFCFHLKSWKSSRIFLFNLAVADFL 75
>GP109_RAT (Q80Z39) Nicotinic acid receptor (G-protein coupled receptor 109)| (G-protein coupled receptor HM74) (Protein PUMA-G) Length = 360 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 273 YGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLL 163 +G+ + W +F F L++W R+FL++L VA L Sbjct: 37 FGLLGNGLALW-IFCFHLKSWKSSRIFLFNLAVADFL 72
>GP109_MOUSE (Q9EP66) Nicotinic acid receptor (G-protein coupled receptor 109)| (G-protein coupled receptor HM74) (Protein PUMA-G) Length = 360 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 273 YGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLL 163 +G+ + W +F F L++W R+FL++L VA L Sbjct: 37 FGLLGNGLALW-IFCFHLKSWKSSRIFLFNLAVADFL 72
>GALC_CANFA (P54804) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -3 Query: 290 VDYAHLMESPNFQ*CSGIFFPFSSATGFGEEYFCIVCALHLF*REVTFARRSLDYYST 117 VDY E+PNF +G+F F++ GE F + L+ R +T+A D Y+T Sbjct: 480 VDYPFFSEAPNFADQTGVFEYFTNIEDPGEHRFTLRQVLNQ--RPITWA---ADAYNT 532
>NEUL_RABIT (P42675) Neurolysin, mitochondrial precursor (EC 3.4.24.16)| (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endopeptidase) (MEP) Length = 704 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -2 Query: 354 HRQVTHRI*FKMKMKRHGMSNCRLCTSYGIAKFSVMFWNL 235 HR RI FKM + R MS + +SY A +V+ W+L Sbjct: 13 HRVGGSRILFKMTLGREVMSPLQAVSSYTAAGRNVLRWDL 52
>Y5204_STRCO (Q9FCI4) UPF0182 protein SCO5204| Length = 1000 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = -2 Query: 285 LCTSYGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLLARSNIRSKVFGLLQYIA 112 L + G+ M + +F+ F +W+W R YS + L VFGLL +A Sbjct: 26 LLLTLGVLAVLAMAFTMFAGFWTDWLWYRSVHYSSVFTTTLWTKIGLFFVFGLLMALA 83
>RECX_OCEIH (Q8CV64) Regulatory protein recX| Length = 272 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 143 ERMLLLAKRDATHKLYKNTLHQIQLRRKKEK 235 E + +L ++D HK Y T+H + R + EK Sbjct: 53 EMISILEQKDTLHKAYTLTIHFLSYRMRSEK 83
>Y3055_STRAW (Q82IS8) UPF0182 protein SAV3055| Length = 998 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = -2 Query: 285 LCTSYGIAKFSVMFWNLFSFFLRNWIW*RVFLYSLCVASLLARSNIRSKVFGLLQYIA 112 L + G+ M + +F+ F +W+W R YS + L+ VFGLL +A Sbjct: 25 LLMTLGVLAVLGMAFVMFAGFWTDWLWYRSVKYSSVFTTTLSTKIGLFFVFGLLMAVA 82
>ADT_DROME (Q26365) ADP,ATP carrier protein (ADP/ATP translocase) (Adenine| nucleotide translocator) (ANT) (Stress sensitive B protein) Length = 312 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 Query: 146 RMLLLAKRDATHKLYKNTLH 205 RM++ + R AT +YKNTLH Sbjct: 251 RMMMQSGRKATEVIYKNTLH 270
>GRSB_BREBE (P0C064) Gramicidin S synthetase 2 (Gramicidin S synthetase II)| [Includes: ATP-dependent proline adenylase (ProA) (Proline activase); ATP-dependent valine adenylase (ValA) (Valine activase); ATP-dependent ornithine adenylase (OrnA) (Ornithine Length = 4449 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +3 Query: 84 SNHHLHEAPWLCTVIIQRPSSECYFSLKEMQRTNYTKILFTKSSCGGKRKKDSRTLLKIW 263 S HH+ W C II Y SLKE + + K K+D + L+ W Sbjct: 143 SFHHILMDGW-CFNIIFNDLFNIYLSLKEKKPLQLEAVQPYKQFIKWLEKQDKQEALRYW 201 Query: 264 RFHKM 278 + H M Sbjct: 202 KEHLM 206
>GRSB_ANEMI (P0C063) Gramicidin S synthetase 2 (Gramicidin S synthetase II)| [Includes: ATP-dependent proline adenylase (ProA) (Proline activase); ATP-dependent valine adenylase (ValA) (Valine activase); ATP-dependent ornithine adenylase (OrnA) (Ornithine Length = 4450 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +3 Query: 84 SNHHLHEAPWLCTVIIQRPSSECYFSLKEMQRTNYTKILFTKSSCGGKRKKDSRTLLKIW 263 S HH+ W C II Y SLKE + + K K+D + L+ W Sbjct: 143 SFHHILMDGW-CFNIIFNDLFNIYLSLKEKKPLQLEAVQPYKQFIKWLEKQDKQEALRYW 201 Query: 264 RFHKM 278 + H M Sbjct: 202 KEHLM 206
>GPA10_CAEBR (Q4VT42) Guanine nucleotide-binding protein alpha-10 subunit| Length = 356 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = -1 Query: 331 LVQDEDEKARDEQL*IMHILWNRQIFSNVLESFFLFPPQLDL----VKSIFV 188 LV+DE DE L + HI++N + F+ + LF ++DL VKS+ + Sbjct: 237 LVEDESVNRMDEALNLYHIVFNGKYFTKA--ACILFLNKIDLFREKVKSVSI 286
>ZO26_XENLA (P18746) Oocyte zinc finger protein XLCOF26 (Fragment)| Length = 196 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Frame = +3 Query: 57 QSIYILNQTSNHH-LH--EAPWLCTVIIQRPSSECYFSLKEMQRTNYTKILFTKSSCGGK 227 +S + + NHH +H E P+ C ++ S + SL++ QRT+ K LFT + CG Sbjct: 97 KSFNLWSTLRNHHKIHTGEKPFTCPECGKKFSVKN--SLRKHQRTHARKKLFTCTECGKT 154 Query: 228 RKKDS 242 K S Sbjct: 155 FTKKS 159
>GYRA_MYCKA (Q49608) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mka gyrA| intein] (Fragment) Length = 549 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 3/93 (3%) Frame = +3 Query: 3 TLQIQANKSTLGFIFFVSQSIYILNQTSNHHLHEAPWLCTVIIQRPSSECY---FSLKEM 173 T+QI N + V Q + S +LH A VI R +E + Sbjct: 306 TIQISYNTVSKQLAMDVQQMLLEFGVISRRYLHAAGEYKVVITDRAQAELFPKQIGFGGA 365 Query: 174 QRTNYTKILFTKSSCGGKRKKDSRTLLKIWRFH 272 ++T +KIL C G+ L + R H Sbjct: 366 KQTELSKILAAMPPCAGRDSDHVPGLARFIRRH 398
>TILS_PORPU (P51383) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 327 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +3 Query: 27 STLGFIFFVSQSIYILNQTSNHHLHEAPWLCTVIIQRPSSECYFSLKEMQRTNYTKILF 203 +++G+ ++QS+YI+ N + E W C Y+ + R+NY I+F Sbjct: 148 ASIGWSCQLAQSVYIVRPLLNFYRFETSWFC---------RKYYLPIWVDRSNYDYIMF 197
>LGB2_VIGUN (Q43296) Leghemoglobin-2 (Leghemoglobin II) (LbII)| Length = 145 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 141 KVFGLLQYIAKVLHADGGLKFDSKCKSIETQKR*NQVCF 25 K+FGL++ A L A GG+ D+ ++ +QK N F Sbjct: 65 KLFGLVRDSAAQLRASGGVVADAALGAVHSQKAVNDAQF 103
>LGB1_VIGUN (Q43236) Leghemoglobin-1 (Leghemoglobin I) (LbI)| Length = 145 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 141 KVFGLLQYIAKVLHADGGLKFDSKCKSIETQKR*NQVCF 25 K+FGL++ A L A GG+ D+ ++ +QK N F Sbjct: 65 KLFGLVRDSAAQLRASGGVVADAALGAVHSQKAVNDAQF 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,833,037 Number of Sequences: 219361 Number of extensions: 1171932 Number of successful extensions: 2719 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2719 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
