ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chr... 42 1.3
2emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chro... 42 1.3
3emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chro... 42 1.3
4emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on ch... 42 1.3
5emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chr... 42 1.3
6emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chr... 42 1.3
7emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chro... 42 1.3
8emb|BX927133.5| Human DNA sequence from clone DAMA-61E19 on chro... 42 1.3
9gb|AC004178.1|AC004178 Homo sapiens clone UWGC:y19x006 from 6p21... 42 1.3
10emb|AL035542.8|HS994E9 Human DNA sequence from clone RP5-994E9 o... 42 1.3
11gb|AY305266.1| Cucurbita pepo clone S-N08 atp9 gene, complete se... 40 5.1
12gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 40 5.1
13gb|AC012590.5| Homo sapiens BAC clone CTD-2375H4 from 7, complet... 40 5.1
14emb|AL109622.10|HSDJ526F5 Human DNA sequence from clone RP3-526F... 40 5.1
15emb|AL049699.8|HSJ747H23 Human DNA sequence from clone RP4-747H2... 40 5.1
16gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, com... 40 5.1
17gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosom... 40 5.1
18gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, com... 40 5.1
19emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chr... 40 5.1
20emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 40 5.1
21emb|AL731652.1| Dog DNA sequence from clone RP81-70I6, complete ... 40 5.1

>emb|BX000531.11| Human DNA sequence from clone DAQB-12N14 on chromosome 6 Contains the
             OR2H1 gene for olfactory receptor, family 2, subfamily H,
             member 1, the UBDP1 pseudogene for ubiquitin D pseudogene
             1, the MAS1L gene for MAS1 oncogene-like, the RPS17P1
             pseudogene for ribosomal protein S17 pseudogene 1 and the
             DAQB-12N14.5 gene for a novel transcript, complete
             sequence
          Length = 89139

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 24657 gtttcatcttttttgtgtctc 24677



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>emb|BX247947.4| Human DNA sequence from clone DASS-372E1 on chromosome 6, complete
             sequence
          Length = 112061

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 28441 gtttcatcttttttgtgtctc 28461



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>emb|AL645927.3| Human DNA sequence from clone XXbac-13B8 on chromosome 6 contains the
             OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
             receptor, family 12, subfamily D, member 2, family 11,
             subfamily A, member 1, family 10, subfamily C, member 1
             and family 2, subfamily H, member 1, the OR12D1P
             pseudogene for olfactory receptor, family12, subfamily D,
             member 1, a diubiquitin pseudogene, the MRG gene for
             MAS-related G protein-coupled receptor MRG and a ribosomal
             protein S17 (RPS17) pseudogene, complete sequence
          Length = 112578

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 79126 gtttcatcttttttgtgtctc 79146



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>emb|AL662869.2| Human DNA sequence from clone XXbac-128A13 on chromosome 6 contains the
             OR12D2, OR11A1, OR10C1 and OR2H1 genes for olfactory
             receptor, family 12, subfamily D, member 2, family 11,
             subfamily A, member 1, family 10, subfamily C, member 1,
             family 2, subfamily H, member 1, the gene for MAS-related
             G protein-coupled receptor (MRG), the OR12D1P pseudogene
             for olfactory receptor, family 12, subfamily D, member 1,
             a diubiquitin pseudogene and a ribosomal protein S17
             (RPS17) pseudogene, complete sequence
          Length = 133836

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 75793 gtttcatcttttttgtgtctc 75813



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>emb|CR388393.8| Human DNA sequence from clone DADB-136A24 on chromosome 6, complete
              sequence
          Length = 159366

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     gtttcatcttttttgtgtctc 57
              |||||||||||||||||||||
Sbjct: 100599 gtttcatcttttttgtgtctc 100619



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>emb|CR759768.2| Human DNA sequence from clone DAMC-143I21 on chromosome 6, complete
             sequence
          Length = 123752

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 55242 gtttcatcttttttgtgtctc 55262



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>emb|CR759956.2| Human DNA sequence from clone DAAP-341G9 on chromosome 6, complete
             sequence
          Length = 81080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 21646 gtttcatcttttttgtgtctc 21666



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>emb|BX927133.5| Human DNA sequence from clone DAMA-61E19 on chromosome 6, complete
             sequence
          Length = 107459

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 69285 gtttcatcttttttgtgtctc 69305



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>gb|AC004178.1|AC004178 Homo sapiens clone UWGC:y19x006 from 6p21, complete sequence
          Length = 36384

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 10939 gtttcatcttttttgtgtctc 10919



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>emb|AL035542.8|HS994E9 Human DNA sequence from clone RP5-994E9 on chromosome 6p21.31-22.2
             Contains the OR12D2, OR11A1, OR10C1 and OR2H1 genes for
             olfactory receptors 12D2, 11A1, 10C1 and 2H1, olfactory
             receptor 12D1 pseudogene OR12D1P, a diubiquitin
             pseudogene, the MAS-related G protein-coupled receptor MRG
             gene, an RPS17 (40S ribosomal protein S17) pseudogene and
             GSSs, complete sequence
          Length = 114868

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    gtttcatcttttttgtgtctc 57
             |||||||||||||||||||||
Sbjct: 81009 gtttcatcttttttgtgtctc 81029



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>gb|AY305266.1| Cucurbita pepo clone S-N08 atp9 gene, complete sequence; and nad5
            gene, partial sequence; mitochondrial
          Length = 9147

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 71   tttgaatcaaacttcaaaccacca 94
            |||||||||| |||||||||||||
Sbjct: 5106 tttgaatcaatcttcaaaccacca 5129



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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    caagccaacaaaagcacact 34
             ||||||||||||||||||||
Sbjct: 39943 caagccaacaaaagcacact 39924



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>gb|AC012590.5| Homo sapiens BAC clone CTD-2375H4 from 7, complete sequence
          Length = 149708

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     atttacattttgaatcaaac 82
              ||||||||||||||||||||
Sbjct: 130464 atttacattttgaatcaaac 130445



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>emb|AL109622.10|HSDJ526F5 Human DNA sequence from clone RP3-526F5 on chromosome Xq26.3-28
             Contains the 3' end of a novel gene and the gene for a
             novel protein similar to ubiquitin-conjugating enzyme E2N
             (UBC13 homolog, yeast) (UBE2N), complete sequence
          Length = 122900

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   caaaaatactcttcaccaaa 209
             ||||||||||||||||||||
Sbjct: 93793 caaaaatactcttcaccaaa 93774



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>emb|AL049699.8|HSJ747H23 Human DNA sequence from clone RP4-747H23 on chromosome 6q13-15 Contains
             the 3' end of the ME1 gene for malic enzyme 1
             (NADP(+)-dependent, cytosolic), a novel gene, the 5' end
             of the AGM1 gene for N-acetylglucosamine-phosphate mutase
             and two CpG islands, complete sequence
          Length = 114201

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    caatcgatttacattttgaa 76
             ||||||||||||||||||||
Sbjct: 25954 caatcgatttacattttgaa 25935



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>gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, complete sequence
          Length = 158404

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tttacattttgaatcaaact 83
             ||||||||||||||||||||
Sbjct: 79994 tttacattttgaatcaaact 79975



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>gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosome 1, complete sequence
          Length = 180181

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    caagccaacaaaagcacact 34
             ||||||||||||||||||||
Sbjct: 19128 caagccaacaaaagcacact 19147



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>gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, complete sequence
          Length = 178009

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   gtgccttttcatcttcatct 323
             ||||||||||||||||||||
Sbjct: 19509 gtgccttttcatcttcatct 19528



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>emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chromosome 1, complete
              sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     caagccaacaaaagcacact 34
              ||||||||||||||||||||
Sbjct: 174662 caagccaacaaaagcacact 174643



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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     aaatccaagccaacaaaagcacac 33
              ||||| ||||||||||||||||||
Sbjct: 568813 aaatcaaagccaacaaaagcacac 568790



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>emb|AL731652.1| Dog DNA sequence from clone RP81-70I6, complete sequence
          Length = 169460

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     cttcaaaccaccatctgcat 101
              ||||||||||||||||||||
Sbjct: 139337 cttcaaaccaccatctgcat 139318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,924,861
Number of Sequences: 3902068
Number of extensions: 3924861
Number of successful extensions: 78209
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78169
Number of HSP's gapped (non-prelim): 40
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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