>ATY1_ARATH (Q9LT02) Putative cation-transporting ATPase (EC 3.6.3.-)|
          Length = 1179

 Score =  105 bits (263), Expect = 2e-23
 Identities = 45/71 (63%), Positives = 57/71 (80%)
 Frame = -1

Query: 395  VITSDMFRDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQ 216
            VI SD+FRDLND +KL PLP+G+R KLL+WA LMF  CY WER LRWAFPGK+ +W+ +Q
Sbjct: 1107 VIASDLFRDLNDSLKLVPLPQGLRDKLLIWASLMFIICYSWERLLRWAFPGKISSWKHKQ 1166

Query: 215  KQAVANLDKKQ 183
            +   ANL+KK+
Sbjct: 1167 RAVTANLEKKK 1177

>KNOX3_MAIZE (P56661) Homeobox protein knotted-1-like 3 (Fragment)|
          Length = 88

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -1

Query: 374 RDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQAVANL 195
           ++L    K + LP+  R KLL W          WE   RW +P +M   EK        L
Sbjct: 22  KELCKKRKKDKLPKEARQKLLSW----------WELHYRWPYPSEM---EKIALAESTGL 68

Query: 194 DKKQ 183
           ++KQ
Sbjct: 69  EQKQ 72

>KNAP2_MALDO (O04135) Homeobox protein knotted-1-like 2 (KNAP2)|
          Length = 397

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 386 SDMFRDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQA 207
           S + ++L+   K   LP+  R KLL W          WE   +W +P +    EK     
Sbjct: 293 SSLKQELSKKKKKGKLPKDARQKLLSW----------WELHYKWPYPSES---EKVALAE 339

Query: 206 VANLDKKQ 183
              LD+KQ
Sbjct: 340 STGLDQKQ 347

>KNAT1_ARATH (P46639) Homeobox protein knotted-1-like 1 (KNAT1)|
          Length = 398

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 386 SDMFRDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQA 207
           S + ++L+   K   LP+  R KLL W          WE   +W +P +    EK     
Sbjct: 293 SSLKQELSKKKKKGKLPKEARQKLLTW----------WELHYKWPYPSES---EKVALAE 339

Query: 206 VANLDKKQ 183
              LD+KQ
Sbjct: 340 STGLDQKQ 347

>ASNH_MYCTU (P64247) Putative asparagine synthetase [glutamine-hydrolyzing] (EC|
           6.3.5.4)
          Length = 652

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = -1

Query: 347 EPLPEGMRGKLLL--WAMLMFCGCYGWERF-----LRWAFPGKMPAW 228
           +PLPEGMRGK LL   ++ +    YG  R      LR   PG  P W
Sbjct: 421 KPLPEGMRGKSLLHRGSLTLEERYYGNARSFSGAQLREVLPGFRPDW 467

>ASNH_MYCBO (P64248) Putative asparagine synthetase [glutamine-hydrolyzing] (EC|
           6.3.5.4)
          Length = 652

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = -1

Query: 347 EPLPEGMRGKLLL--WAMLMFCGCYGWERF-----LRWAFPGKMPAW 228
           +PLPEGMRGK LL   ++ +    YG  R      LR   PG  P W
Sbjct: 421 KPLPEGMRGKSLLHRGSLTLEERYYGNARSFSGAQLREVLPGFRPDW 467

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +2

Query: 176 PMPASCLGLQPPASVASPMLASCLGTPIAKTAPIHSN 286
           P  AS LG QPP + A+P       TPI  T   H N
Sbjct: 605 PPVASSLGAQPPTTTAAP------PTPIEPTQRAHQN 635

>KNAP1_MALDO (O04134) Homeobox protein knotted-1-like 1 (KNAP1)|
          Length = 398

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 386 SDMFRDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQA 207
           S + ++L+   K   LP+  R KLL W          WE   +W +P +    EK     
Sbjct: 294 SSLKQELSKKKKKGKLPKEARQKLLSW----------WELHYKWPYPSES---EKVALAE 340

Query: 206 VANLDKKQ 183
              LD+KQ
Sbjct: 341 STGLDQKQ 348

>KN1_LYCES (Q41330) Homeotic protein knotted-1 (TKN1)|
          Length = 355

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 386 SDMFRDLNDYMKLEPLPEGMRGKLLLWAMLMFCGCYGWERFLRWAFPGKMPAWEKRQKQA 207
           S + ++L+   K   LP+  R KL+ W          WE   +W +P +    EK     
Sbjct: 250 SSLKQELSKKKKKGKLPKDARQKLITW----------WELHYKWPYPSES---EKVALAE 296

Query: 206 VANLDKKQ 183
              LD+KQ
Sbjct: 297 STGLDQKQ 304

>HEM2_SOYBN (P43210) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 412

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 197 GLQPPASVASPMLASCLGTPIAKTAPIH----SNRKT 295
           G  PPA    P  A+ +GTP+  + P+H     NRK+
Sbjct: 60  GKVPPAPPVRPRPAAPVGTPVVPSLPLHRRPRRNRKS 96

>YJT8_YEAST (P39535) Hypothetical 97.7 kDa membrane protein in PRP21-UBP12|
           intergenic region
          Length = 881

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 207 GCKPRQEAGIGSCILFFHHCWI 142
           GCKPR    +  C++FF   WI
Sbjct: 533 GCKPRNVLLMAMCVVFFLSMWI 554

>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5037

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143  IQQWWKKRMQDPMPASCLGLQPP-ASVASPMLASCLG 250
            + +WW++  + P PA   G  PP  +V S  L S LG
Sbjct: 3281 LPRWWERGPEAPPPALPAGAPPPCTAVTSDHLNSLLG 3317

>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143  IQQWWKKRMQDPMPASCLGLQPP-ASVASPMLASCLG 250
            + +WW++  + P PA   G  PP  +V S  L S LG
Sbjct: 3282 LPRWWERGPEAPPPALPAGAPPPCTAVTSDHLNSLLG 3318

>SEL10_CAEEL (Q93794) F-box/WD-repeat protein sel-10 (Suppressor/enhancer of|
           lin-12) (Sel-10 protein)
          Length = 587

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276 SIATAKHKHSPKQQFAPHSFWQGLELHVVVQIPEHIR-CD 392
           S+   + KH P         WQG  +   V IP+HI+ CD
Sbjct: 166 SLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQPCD 205

>TILS_YERPS (Q667K7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 460

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 228 PCWHLAWERP 257
           PCWHL W++P
Sbjct: 447 PCWHLDWDKP 456

>TILS_YERPE (Q8ZH50) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 460

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 228 PCWHLAWERP 257
           PCWHL W++P
Sbjct: 447 PCWHLDWDKP 456

>HXB4A_BRARE (P22574) Homeobox protein Hox-B4a (Hox-B4) (Zf-13)|
          Length = 246

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = +2

Query: 173 DPMPASCLGLQPPASVASP----MLASCLGTPIAKTAPIHSNRKT*A*PKAAVCPSFLLA 340
           DP  +SC G   PA+V SP    +  + L TP+ +  P H        P  A   +    
Sbjct: 60  DPPYSSCQGPGQPAAVISPRGHVLPTTALSTPLPE--PSHHCDSVTPSPPPACGQTPTSQ 117

Query: 341 RARASCSRSDP*TYP 385
                 SR DP  YP
Sbjct: 118 NTSTVSSRKDPVVYP 132

>HOG3_HORVU (P80198) Gamma-hordein-3|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 255 PSQKPLPSIATAKHKHSPKQQFAPHSFWQGLELHVVVQIPEHI 383
           P Q+P P      H+H   QQ     F Q + L    Q P+ +
Sbjct: 50  PQQQPFPQQPQLPHQHQFPQQLPQQQFPQQMPLQPQQQFPQQM 92

>IP22_LYCES (Q43710) Proteinase inhibitor type-2 TR8 precursor (Proteinase|
           inhibitor type II TR8)
          Length = 223

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 319 NCCFGLCLCFAVAMDGSGFCDGRSQ 245
           NCC G   C   + DG+  CDG S+
Sbjct: 182 NCCAGKKGCKYFSADGTYICDGESE 206



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 319 NCCFGLCLCFAVAMDGSGFCDGRSQ 245
           NCC G   C   + DG+  CDG S+
Sbjct: 118 NCCAGKKGCKYFSKDGTYICDGESE 142



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 319 NCCFGLCLCFAVAMDGSGFCDGRSQ 245
           NCC G   C   + DG+  CDG S+
Sbjct: 54  NCCAGKKGCKYFSKDGTYICDGESE 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,754,469
Number of Sequences: 219361
Number of extensions: 1141658
Number of successful extensions: 3038
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)