ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
3dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
5dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6gb|AY106982.1| Zea mays PCO102337 mRNA sequence 94 4e-16
7emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 44 0.32
8emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, c... 44 0.32
9gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.3
10gb|AY926321.1| Aponogeton hexatepalus voucher Sainty 434337 5.8S... 42 1.3
11gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 5.1
12gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
13ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
14ref|XM_472360.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
15gb|AY623084.1| Crocus sativus unknown mRNA 40 5.1
16ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin he... 40 5.1
17ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin he... 40 5.1
18ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy... 40 5.1
19gb|AY289593.1| Mycobacterium ulcerans FabH-like protein and type... 40 5.1
20gb|AY394445.2| Mycobacterium ulcerans clone 92 mycolactone polyk... 40 5.1
21gb|AY394446.2| Mycobacterium ulcerans clone 94 mycolactone polyk... 40 5.1
22gb|AY394441.2| Mycobacterium ulcerans clone 85 mycolactone polyk... 40 5.1
23gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, compl... 40 5.1
24gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete... 40 5.1
25gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 5.1
26emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on ch... 40 5.1
27emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and parti... 40 5.1
28emb|BX649209.1| Mycobacterium ulcerans plasmid pMUM001, complete... 40 5.1
29emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
30emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 5.1
31gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, comp... 40 5.1
32gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, c... 40 5.1
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
34gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase su... 40 5.1
35gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase su... 40 5.1
36gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase sub... 40 5.1
37gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induce... 40 5.1
38gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, compl... 40 5.1
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.1
40dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
41dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
42dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.1
43dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
44dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.1
45dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
46ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 ... 40 5.1
47dbj|AK110580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
48gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene 40 5.1
49dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, ... 40 5.1 
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 183     ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 242
               |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 1701639 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 1701580

                                      
Query: 243     cccgccaacctccatcgtcacgc 265
               ||| || ||||||| | ||||||
Sbjct: 1701579 ccctcccacctccaccatcacgc 1701557



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 261      cacgcccctcttctcgccct 280
                ||||||||||||||||||||
Sbjct: 35501711 cacgcccctcttctcgccct 35501692



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 353      cggcggtggcgtcgtcgtccgcgc 376
                ||||||||||||| ||||||||||
Sbjct: 33219143 cggcggtggcgtcctcgtccgcgc 33219120
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 183   ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 242
             |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 43982 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 43923

                                    
Query: 243   cccgccaacctccatcgtcacgc 265
             ||| || ||||||| | ||||||
Sbjct: 43922 ccctcccacctccaccatcacgc 43900
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>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full
            insert sequence
          Length = 3486

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3035 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2976

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2975 ccctcccacctccaccatcacgc 2953
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>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full
            insert sequence
          Length = 3193

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 183  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 242
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 243  cccgccaacctccatcgtcacgc 265
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
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>gb|AY106982.1| Zea mays PCO102337 mRNA sequence
          Length = 641

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                       
Query: 182 cctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactcca 241
           |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||  |||
Sbjct: 207 cctatgcttcgatccgcatgttccatgtcatggtgaagctcttcccgagcggcaatgcca 266

                  
Query: 242 gcccgcc 248
           |||||||
Sbjct: 267 gcccgcc 273



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 331 aagtaggggctcgacgtggcgacggcggtggcgtc 365
           ||||| ||||||||||| |||||||| ||||||||
Sbjct: 350 aagtaagggctcgacgtcgcgacggcagtggcgtc 384
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
              complete sequence
          Length = 197042

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 2      ggtgaatcagagttcacaaatggtgt 27
              ||||| ||||||||||||||||||||
Sbjct: 168693 ggtgattcagagttcacaaatggtgt 168668
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>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence
          Length = 160710

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2     ggtgaatcagagttcacaaatggtgt 27
             ||||| ||||||||||||||||||||
Sbjct: 56188 ggtgattcagagttcacaaatggtgt 56213
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    gcggtggcgtcgtcgtccgcg 375
              |||||||||||||||||||||
Sbjct: 982452 gcggtggcgtcgtcgtccgcg 982432
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>gb|AY926321.1| Aponogeton hexatepalus voucher Sainty 434337 5.8S ribosomal RNA
           gene and internal transcribed spacer 2, partial sequence
          Length = 470

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 339 gctcgacgtggcgacggcggtggcgtcgtcgtccgcg 375
           ||||| || |||| |||||| ||||||||||||||||
Sbjct: 409 gctcgccggggcggcggcggcggcgtcgtcgtccgcg 373
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     tttaagctctataaatttaa 106
              ||||||||||||||||||||
Sbjct: 798940 tttaagctctataaatttaa 798959
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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 348   ggcgacggcggtggcgtcgtcgtc 371
             |||| |||||||||||||||||||
Sbjct: 79591 ggcggcggcggtggcgtcgtcgtc 79614
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>ref|NM_190436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 cacgcccctcttctcgccct 280
           ||||||||||||||||||||
Sbjct: 24  cacgcccctcttctcgccct 43
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>ref|XM_472360.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 348 ggcgacggcggtggcgtcgtcgtc 371
           |||| |||||||||||||||||||
Sbjct: 392 ggcggcggcggtggcgtcgtcgtc 369
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>gb|AY623084.1| Crocus sativus unknown mRNA
          Length = 532

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 atggtgaagctcttccccag 230
           ||||||||||||||||||||
Sbjct: 359 atggtgaagctcttccccag 378
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>ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC639686), mRNA
          Length = 5817

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ttccatgtcatggtgaagct 221
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
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>ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC677358), mRNA
          Length = 5820

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ttccatgtcatggtgaagct 221
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
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>ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC667772), mRNA
          Length = 5820

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  ttccatgtcatggtgaagct 221
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
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>gb|AY289593.1| Mycobacterium ulcerans FabH-like protein and type I polyketide
            synthase loading module genes, partial cds
          Length = 6747

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 345  cgtggcgacggcggtggcgtcgtcgtcc 372
            |||||||| ||||| |||||||||||||
Sbjct: 4831 cgtggcgaaggcggcggcgtcgtcgtcc 4858
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>gb|AY394445.2| Mycobacterium ulcerans clone 92 mycolactone polyketide synthase
           (mlpks) gene, partial cds
          Length = 442

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 345 cgtggcgacggcggtggcgtcgtcgtcc 372
           |||||||| ||||| |||||||||||||
Sbjct: 32  cgtggcgaaggcggcggcgtcgtcgtcc 59
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>gb|AY394446.2| Mycobacterium ulcerans clone 94 mycolactone polyketide synthase
            (mlpks) pseudogene, partial sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 345  cgtggcgacggcggtggcgtcgtcgtcc 372
            |||||||| ||||| |||||||||||||
Sbjct: 1139 cgtggcgaaggcggcggcgtcgtcgtcc 1166
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>gb|AY394441.2| Mycobacterium ulcerans clone 85 mycolactone polyketide synthase
           (mlpks) pseudogene, partial sequence
          Length = 1781

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 345 cgtggcgacggcggtggcgtcgtcgtcc 372
           |||||||| ||||| |||||||||||||
Sbjct: 588 cgtggcgaaggcggcggcgtcgtcgtcc 561
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>gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, complete sequence
          Length = 203964

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ttccatgtcatggtgaagct 221
             ||||||||||||||||||||
Sbjct: 52009 ttccatgtcatggtgaagct 52028
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>gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete sequence
          Length = 40267

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   tgcgcgtccgcggccaagaagtag 336
             |||||||||||||||| |||||||
Sbjct: 19060 tgcgcgtccgcggccaggaagtag 19037
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      actttttaagctctataaat 102
               ||||||||||||||||||||
Sbjct: 1103611 actttttaagctctataaat 1103630
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>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains
             part of the gene for VPS10 domain receptor protein SORCS
             1, complete sequence
          Length = 158724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   catgcagacggaagcagagg 163
             ||||||||||||||||||||
Sbjct: 93875 catgcagacggaagcagagg 93894
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>emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial fkbD gene encoding FK506
             polyketide synthase and cytochrome P-450-9-deoxo-FK506
             hydroxylase, respectively
          Length = 19791

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gcgtcgtcgtccgcgccgtc 380
             ||||||||||||||||||||
Sbjct: 19172 gcgtcgtcgtccgcgccgtc 19153
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>emb|BX649209.1| Mycobacterium ulcerans plasmid pMUM001, complete plasmid genome
          Length = 174155

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 345    cgtggcgacggcggtggcgtcgtcgtcc 372
              |||||||| ||||| |||||||||||||
Sbjct: 136524 cgtggcgaaggcggcggcgtcgtcgtcc 136497



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 345   cgtggcgacggcggtggcgtcgtcgtcc 372
             |||||||| ||||| |||||||||||||
Sbjct: 71699 cgtggcgaaggcggcggcgtcgtcgtcc 71672
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>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
              complete sequence
          Length = 133759

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 348    ggcgacggcggtggcgtcgtcgtc 371
              |||| |||||||||||||||||||
Sbjct: 124203 ggcggcggcggtggcgtcgtcgtc 124226
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tttaagctctataaatttaa 106
             ||||||||||||||||||||
Sbjct: 97835 tttaagctctataaatttaa 97854
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>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence
          Length = 165311

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   atgcagacggaagcagaggc 164
             ||||||||||||||||||||
Sbjct: 90987 atgcagacggaagcagaggc 90968
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>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence
          Length = 202956

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aagcagaggcaaatgcagct 174
             ||||||||||||||||||||
Sbjct: 99826 aagcagaggcaaatgcagct 99807
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 348      ggcgacggcggtggcgtcgtcgtc 371
                |||| |||||||||||||||||||
Sbjct: 19835741 ggcggcggcggtggcgtcgtcgtc 19835764
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>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ttttaagctctataaattta 105
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induced mRNA sequence
          Length = 1079

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 atggtgaagctcttccccag 230
           ||||||||||||||||||||
Sbjct: 207 atggtgaagctcttccccag 188
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>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence
          Length = 181663

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     agctctataaatttaaatta 110
              ||||||||||||||||||||
Sbjct: 175855 agctctataaatttaaatta 175836
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 355     gcggtggcgtcgtcgtccgcgccg 378
               |||||||| |||||||||||||||
Sbjct: 2573996 gcggtggcctcgtcgtccgcgccg 2573973
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>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446G04
          Length = 143515

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   cacgcccctcttctcgccct 280
             ||||||||||||||||||||
Sbjct: 31898 cacgcccctcttctcgccct 31879
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1088C09
          Length = 154084

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    cacgcccctcttctcgccct 280
              ||||||||||||||||||||
Sbjct: 125660 cacgcccctcttctcgccct 125641
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     tggcgacggcggtggcgtcg 366
               ||||||||||||||||||||
Sbjct: 2735170 tggcgacggcggtggcgtcg 2735151
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>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 353   cggcggtggcgtcgtcgtccgcgc 376
             ||||||||||||| ||||||||||
Sbjct: 12390 cggcggtggcgtcctcgtccgcgc 12367
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>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tactttttaagctctataaa 101
             ||||||||||||||||||||
Sbjct: 24387 tactttttaagctctataaa 24368
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>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full
           insert sequence
          Length = 1978

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 cacgcccctcttctcgccct 280
           ||||||||||||||||||||
Sbjct: 70  cacgcccctcttctcgccct 89
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>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543),
            partial mRNA
          Length = 3441

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  gacgacgacgagtcgaacga 135
            ||||||||||||||||||||
Sbjct: 1237 gacgacgacgagtcgaacga 1256
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>dbj|AK110580.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E08, full
           insert sequence
          Length = 1232

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 348 ggcgacggcggtggcgtcgtcgtc 371
           |||| |||||||||||||||||||
Sbjct: 439 ggcggcggcggtggcgtcgtcgtc 416
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>gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene
          Length = 2626

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  atggtgaagctcttccccag 230
            ||||||||||||||||||||
Sbjct: 2413 atggtgaagctcttccccag 2432
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>dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, complete cds
          Length = 3026

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  atggtgaagctcttccccag 230
            ||||||||||||||||||||
Sbjct: 2293 atggtgaagctcttccccag 2312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,154,533
Number of Sequences: 3902068
Number of extensions: 3154533
Number of successful extensions: 75188
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74547
Number of HSP's gapped (non-prelim): 641
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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