ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05h03 |
|---|---|
| Clone Library Name | barley_pub |
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 40.8 bits (94), Expect = 0.001 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Frame = -2 Query: 414 LESIKKFGEIAEKCLADEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDDCSDSQAQPSD 235 LE++KK +A KC+ G +RPSM +V LE AL L G P C + P++ Sbjct: 747 LEALKKIASVACKCVRMRGKDRPSMDKVTTALEHALALLMGSP-------CIEQPILPTE 799 Query: 234 VPIRIKEAEQSTRPGSHD--SDGQAVDVKIEVP*YRRP 127 V + + ++ S+ S+ + D + + YR P Sbjct: 800 VVLGSSRMHKVSQMSSNHSCSENELADGEDQGIGYRAP 837
>APK1B_ARATH (P46573) Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1)| Length = 412 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -2 Query: 420 YTLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLESALQLQQ 295 Y++E K +A +CL E RP+M EV+ HLE L + Sbjct: 318 YSMEEACKVATLALRCLTFEIKLRPNMNEVVSHLEHIQTLNE 359
>HCC1_PONPY (Q5R4V4) Nuclear protein Hcc-1| Length = 209 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Frame = -2 Query: 399 KFGEIAEKCLA----DEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDDCSDSQAQPSDV 232 K E+ ++CLA +G+ + + + +LE + ++ + + GD+ + + +P ++ Sbjct: 11 KLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAE-EEANEEDVLGDETEEEETKPIEL 69 Query: 231 PIRIKEAEQSTRPGSHDSDGQAVDVKIEVP*YRRPFEVSSKMN 103 P +KE E + ++ + V + E+P R + + + N Sbjct: 70 P--VKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFN 110
>HCC1_HUMAN (P82979) Nuclear protein Hcc-1 (Proliferation-associated| cytokine-inducible protein CIP29) Length = 209 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Frame = -2 Query: 399 KFGEIAEKCLA----DEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDDCSDSQAQPSDV 232 K E+ ++CLA +G+ + + + +LE + ++ + + GD+ + + +P ++ Sbjct: 11 KLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAE-EEANEEDVLGDETEEEETKPIEL 69 Query: 231 PIRIKEAEQSTRPGSHDSDGQAVDVKIEVP*YRRPFEVSSKMN 103 P +KE E + ++ + V + E+P R + + + N Sbjct: 70 P--VKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFN 110
>MMP17_HUMAN (Q9ULZ9) Matrix metalloproteinase-17 precursor (EC 3.4.24.-)| (MMP-17) (Membrane-type matrix metalloproteinase 4) (MT-MMP 4) (Membrane-type-4 matrix metalloproteinase) (MT4-MMP) Length = 606 Score = 30.4 bits (67), Expect = 1.8 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = -2 Query: 339 GEVLWH-LESALQLQQGHPQSTNGD--DCSDSQAQPSDVPIRIKEAE-QSTRPGSHD 181 G+ W L+ L++ G+PQST D C DSQA S V + AE PG HD Sbjct: 498 GQEYWKVLDGELEVAPGYPQSTARDWLVCGDSQADGS-VAAGVDAAEGPRAPPGQHD 553
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -2 Query: 417 TLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDD 265 TL S+ E+A C A E RP MG + L S ++L + P N +D Sbjct: 833 TLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVELWK--PSDQNPED 881
>APK1A_ARATH (Q06548) Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1)| Length = 410 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 420 YTLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLE 316 Y++E K ++ +CL E RP+M EV+ HLE Sbjct: 317 YSMEEACKVATLSLRCLTTEIKLRPNMSEVVSHLE 351
>HCC1_MOUSE (Q9D1J3) Nuclear protein Hcc-1| Length = 209 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = -2 Query: 399 KFGEIAEKCLA----DEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDDCSDSQAQPSDV 232 K E+ ++CLA +G+ + + + +LE + ++ + + GD+ + + +P ++ Sbjct: 11 KLAELKQECLARGLETKGIKQDLINRLQAYLEDHAE-EEANEEDVLGDETEEEEPKPIEL 69 Query: 231 PIRIKEAEQSTRPGSHDSDGQAVDVKIEVP*YRRPFEVSSKMN 103 P +KE E + S+ + V + +P R + + + N Sbjct: 70 P--VKEEEPPEKAVDMASEKKVVKITSGIPQTERMQKRAERFN 110
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 29.3 bits (64), Expect = 4.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 261 SDSQAQPSDVPIRIKEAEQSTRPGSHDSDGQAVDVKIE 148 ++ QAQP I +EAE+ +P S D + V+V+ + Sbjct: 2030 AEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVETQ 2067
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -2 Query: 426 GNYTLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLESALQLQ 298 G Y E++ + E+A +CL RP M +++ LE AL ++ Sbjct: 832 GGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIE 874
>HCC1_RAT (Q498U4) Nuclear protein Hcc-1| Length = 209 Score = 29.3 bits (64), Expect = 4.0 Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Frame = -2 Query: 399 KFGEIAEKCLA----DEGVNRPSMGEVLWHLESALQLQQGHPQSTNGDDCSDSQAQPSDV 232 K E+ ++CLA +G+ + + + +LE + ++ + + GD+ + + +P ++ Sbjct: 11 KLAELKQECLARGLETKGIKQDLINRLQAYLEEHAE-EEANEEDVLGDETEEEEPKPIEL 69 Query: 231 PIRIKEAEQSTRPGSHDSDGQAVDVKIEVP*YRRPFEVSSKMN 103 P +KE E + S+ + V + +P R + + + N Sbjct: 70 P--VKEEEPPEKVVDMASEKKVVKITSGIPQTERMQKRAERFN 110
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -2 Query: 426 GNYTLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLESALQLQ 298 G Y E++ + E+A +CL RP M +++ LE AL ++ Sbjct: 833 GGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIE 875
>DUT_HALSA (Q9HMF3) Probable deoxyuridine 5'-triphosphate nucleotidohydrolase| (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 165 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -2 Query: 261 SDSQAQPSDVPIRIKEAEQSTRPGSHDSDGQAV 163 +D Q QP+ V + + + T PG D+DG+ + Sbjct: 16 ADDQIQPNGVDLTVDAVLEQTEPGRIDTDGKTI 48
>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) (xlAC) Length = 1305 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Frame = -2 Query: 417 TLESIKKFGEIAEKCLADEGVNRPSMGEVLWH--------LESALQLQQGHPQSTNGDDC 262 TL+S GE A + +EGV+ + G W + ++L+ + P+S+ GD Sbjct: 618 TLKSCPSCGETAARDGPEEGVSAANGGGEEWKGGAPRPSAIGASLKDPERSPESSTGDTL 677 Query: 261 SDSQAQPSDV 232 ++SQA D+ Sbjct: 678 TNSQASLYDM 687
>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1| Length = 620 Score = 28.9 bits (63), Expect = 5.3 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Frame = -2 Query: 414 LESIKKFGEIAE-KCLADEGVNRPSMGEVLWHLESALQLQQGHP------QSTNGDDCSD 256 LE++ F + A A+E V+ P V + + + HP QS +G+ S+ Sbjct: 198 LEALAAFAQKAPVPSAAEESVSTPPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSN 257 Query: 255 SQAQPSDVPIRIKEAEQSTRPGS-HDSDGQAV 163 QPS+VP I + GS +D+ Q + Sbjct: 258 PLFQPSNVPQSIPSGPMGMKTGSVNDTQSQQI 289
>RNFC_HAEIN (P71397) Electron transport complex protein rnfC| Length = 819 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 81 LLAGHPPYSFCLKLRKAFCIMAPQS*HQQLAHLNRESLDEWIAR 212 +L H P S +K K + P + HL + LD+WI R Sbjct: 79 MLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIER 122
>NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK (EC 2.7.11.1)| Length = 389 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = -2 Query: 426 GNYTLESIKKFGEIAEKCLADEGVNRPSMGEVL-----WHLESALQLQQGHPQ 283 G Y+L K +A C++ + +RP+M E++ H++ +Q +PQ Sbjct: 315 GQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTMEELHIQKEASKEQQNPQ 367
>YM11_YEAST (P39523) Hypothetical 105.9 kDa protein in RPL15B-GCR3 intergenic| region Length = 943 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = -2 Query: 309 LQLQQGHPQSTNGDDCSDSQAQPSDVPIRIKEAEQSTRPGSHDSDGQAVDVKIEVP 142 + ++ P S NG+D S+ QPS VP + ++ +Q R G +++ QA + ++P Sbjct: 33 IDIRDETPISRNGND-SNINIQPSSVPQQQQQQQQYYRNGMNEAPIQAPLQQRQIP 87
>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog| (Xeroderma pigmentosum group C-complementing protein homolog) (p125) Length = 930 Score = 28.5 bits (62), Expect = 6.9 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Frame = -2 Query: 258 DSQAQPSDVPIRIKEAEQSTRPGSHDSDGQAVDVKIEVP*YRRPF------EVSSKMNRV 97 +S PSD+P++ E E T P ++ +K+E Y R EV M++V Sbjct: 146 NSATSPSDMPVKAVEIEIET-PQQAKERERSEKIKMEFETYLRRMMKRFNKEVQENMHKV 204 Query: 96 GVQLTTCLGACYL*YCNTICRGP 28 + G Y N+ICR P Sbjct: 205 HLLCLLASGF----YRNSICRQP 223
>A36DE_DROME (Q9V3R1) Accessory gland protein Acp36DE precursor| Length = 912 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Frame = -2 Query: 414 LESIKKFGEIAEKCLADEGVNRPSM---------GEVLWHLESALQLQQGHPQSTNGDDC 262 L +KK E+ +K LA++ RPS ++L L++ LQ QQ +S D Sbjct: 463 LLQLKKLTEVQQKQLAEQPTLRPSSKSQSPGQLEQQILLQLQNLLQFQQNQLKS---DTQ 519 Query: 261 SDSQAQPS 238 + SQ Q S Sbjct: 520 TQSQLQES 527
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 426 GNYTLESIKKFGEIAEKCLADEGVNRPSMGEVLWHLE 316 GNY E +++ ++A C + RP M EV+ LE Sbjct: 528 GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 564 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,174,315 Number of Sequences: 219361 Number of extensions: 1322089 Number of successful extensions: 3435 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3339 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3435 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
