ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group... 157 4e-35
2ref|XM_476621.1| Oryza sativa (japonica cultivar-group), mRNA 157 4e-35
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
4dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
5dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
6dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
7dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
8gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, com... 46 0.093
9ref|XM_630426.1| Dictyostelium discoideum hypothetical protein (... 40 5.7
10gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete... 40 5.7
11gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete... 40 5.7
12gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 5.7
13gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.7
14gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.7
15gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, comple... 40 5.7
16gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19... 40 5.7
17gb|AY880360.1| Gekko japonicus GekBS129P mRNA, complete cds 40 5.7
18dbj|AP006660.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.7 
>ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group), P0022E03.2 mRNA
          Length = 3539

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 3135 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3076

                                                                        
Query: 341  atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
            |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 3075 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 3016

                                   
Query: 401  ttgatggactccagtgtgtaatt 423
             ||||||||||||||||||||||
Sbjct: 3015 ctgatggactccagtgtgtaatt 2993



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gtaccaaaagaatttcagtatattgtagggac 32
            ||||||||| ||| |||||| |||||||||||
Sbjct: 3430 gtaccaaaataatctcagtacattgtagggac 3399
to top
>ref|XM_476621.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3109

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627

                                                                        
Query: 341  atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
            |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 2626 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2567

                                   
Query: 401  ttgatggactccagtgtgtaatt 423
             ||||||||||||||||||||||
Sbjct: 2566 ctgatggactccagtgtgtaatt 2544



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gtaccaaaagaatttcagtatattgtagggac 32
            ||||||||| ||| |||||| |||||||||||
Sbjct: 2981 gtaccaaaataatctcagtacattgtagggac 2950
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                           
Query: 281     ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
               |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2490851 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2490910

                                                                           
Query: 341     atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
               |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 2490911 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2490970

                                      
Query: 401     ttgatggactccagtgtgtaatt 423
                ||||||||||||||||||||||
Sbjct: 2490971 ctgatggactccagtgtgtaatt 2490993



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 1       gtaccaaaagaatttcagtatattgtagggac 32
               ||||||||| ||| |||||| |||||||||||
Sbjct: 2490556 gtaccaaaataatctcagtacattgtagggac 2490587
to top
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                         
Query: 281   ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
             |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 55831 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 55890

                                                                         
Query: 341   atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
             |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 55891 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 55950

                                    
Query: 401   ttgatggactccagtgtgtaatt 423
              ||||||||||||||||||||||
Sbjct: 55951 ctgatggactccagtgtgtaatt 55973



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gtaccaaaagaatttcagtatattgtagggac 32
             ||||||||| ||| |||||| |||||||||||
Sbjct: 55536 gtaccaaaataatctcagtacattgtagggac 55567
to top
>dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E02, full
            insert sequence
          Length = 2030

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 1605 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 1546

                                                                        
Query: 341  atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
            |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 1545 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 1486

                                   
Query: 401  ttgatggactccagtgtgtaatt 423
             ||||||||||||||||||||||
Sbjct: 1485 ctgatggactccagtgtgtaatt 1463



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gtaccaaaagaatttcagtatattgtagggac 32
            ||||||||| ||| |||||| |||||||||||
Sbjct: 1900 gtaccaaaataatctcagtacattgtagggac 1869
to top
>dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109J23, full
            insert sequence
          Length = 3540

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 3136 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3077

                                                                        
Query: 341  atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
            |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 3076 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 3017

                                   
Query: 401  ttgatggactccagtgtgtaatt 423
             ||||||||||||||||||||||
Sbjct: 3016 ctgatggactccagtgtgtaatt 2994



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gtaccaaaagaatttcagtatattgtagggac 32
            ||||||||| ||| |||||| |||||||||||
Sbjct: 3431 gtaccaaaataatctcagtacattgtagggac 3400
to top
>dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033H24, full
            insert sequence
          Length = 3109

 Score =  157 bits (79), Expect = 4e-35
 Identities = 127/143 (88%)
 Strand = Plus / Minus

                                                                        
Query: 281  ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 340
            |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627

                                                                        
Query: 341  atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgccgaatttc 400
            |||||||||||| |   ||| |||||||| ||||||||||| |||||||| | |||||||
Sbjct: 2626 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2567

                                   
Query: 401  ttgatggactccagtgtgtaatt 423
             ||||||||||||||||||||||
Sbjct: 2566 ctgatggactccagtgtgtaatt 2544



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gtaccaaaagaatttcagtatattgtagggac 32
            ||||||||| ||| |||||| |||||||||||
Sbjct: 2981 gtaccaaaataatctcagtacattgtagggac 2950
to top
>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence
          Length = 160392

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 306   gcaaagcactctctaggtgccag 328
             |||||||||||||||||||||||
Sbjct: 80994 gcaaagcactctctaggtgccag 81016
to top
>ref|XM_630426.1| Dictyostelium discoideum hypothetical protein (DDB0219613), partial
            mRNA
          Length = 8907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    caaaagaatttcagtatatt 24
            ||||||||||||||||||||
Sbjct: 7405 caaaagaatttcagtatatt 7424
to top
>gb|AC008317.7| Drosophila melanogaster clone BACR08N17, complete sequence
          Length = 169100

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ctgaacaatcatcgccattt 277
             ||||||||||||||||||||
Sbjct: 48412 ctgaacaatcatcgccattt 48393
to top
>gb|AC008356.6| Drosophila melanogaster clone BACR43K14, complete sequence
          Length = 162593

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ctgaacaatcatcgccattt 277
              ||||||||||||||||||||
Sbjct: 120437 ctgaacaatcatcgccattt 120418
to top
>gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-121E15, complete
             sequence
          Length = 197761

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   agaaggctgtgcttgagagt 257
             ||||||||||||||||||||
Sbjct: 34668 agaaggctgtgcttgagagt 34687
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 334     ttcgcccatcgaaggccggttcac 357
               ||||||||||||||||||| ||||
Sbjct: 4025281 ttcgcccatcgaaggccggctcac 4025304
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     ggattgctcggcttctttga 221
               ||||||||||||||||||||
Sbjct: 4041078 ggattgctcggcttctttga 4041059
to top
>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaagaatttcagtatattgt 26
             ||||||||||||||||||||
Sbjct: 81935 aaagaatttcagtatattgt 81916
to top
>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete
              sequence
          Length = 306650

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    ctgaacaatcatcgccattt 277
              ||||||||||||||||||||
Sbjct: 249460 ctgaacaatcatcgccattt 249479
to top
>gb|AY880360.1| Gekko japonicus GekBS129P mRNA, complete cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   tacaagtaacatgcacctaa 75
            ||||||||||||||||||||
Sbjct: 1111 tacaagtaacatgcacctaa 1092
to top
>dbj|AP006660.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16J06, TM0346,
             complete sequence
          Length = 107098

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   caatcttgacatcaacagct 169
             ||||||||||||||||||||
Sbjct: 63411 caatcttgacatcaacagct 63392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,122,751
Number of Sequences: 3902068
Number of extensions: 3122751
Number of successful extensions: 65086
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65010
Number of HSP's gapped (non-prelim): 76
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top