Clone Name | rbastl05h02 |
---|---|
Clone Library Name | barley_pub |
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence Length = 208850 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 tacacacttgatacatataca 96 ||||||||||||||||||||| Sbjct: 48749 tacacacttgatacatataca 48729
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24, complete sequence Length = 143425 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 cacacttgatacatatacaaa 98 ||||||||||||||||||||| Sbjct: 114349 cacacttgatacatatacaaa 114369 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 cacacttgatacatatacaaa 98 ||||||||||||||||||||| Sbjct: 104510 cacacttgatacatatacaaa 104530
>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete sequence Length = 181415 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 cacacttgatacatatacaaa 98 ||||||||||||||||||||| Sbjct: 154850 cacacttgatacatatacaaa 154830
>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130006D24 product:unclassifiable, full insert sequence Length = 3651 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 tacacacttgatacatataca 96 ||||||||||||||||||||| Sbjct: 2970 tacacacttgatacatataca 2990
>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205032 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acacacttgatacatataca 96 |||||||||||||||||||| Sbjct: 184660 acacacttgatacatataca 184679
>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence Length = 179807 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acacacttgatacatataca 96 |||||||||||||||||||| Sbjct: 23843 acacacttgatacatataca 23862
>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0) partial mRNA Length = 287 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 acatatacaaataagcttaa 107 |||||||||||||||||||| Sbjct: 213 acatatacaaataagcttaa 232
>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cacttgatacatatacaaat 99 |||||||||||||||||||| Sbjct: 599 cacttgatacatatacaaat 618
>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence Length = 131548 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 cagttctaaagatgtaactt 71 |||||||||||||||||||| Sbjct: 64502 cagttctaaagatgtaactt 64521
>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence Length = 162101 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 cagttctaaagatgtaactt 71 |||||||||||||||||||| Sbjct: 67063 cagttctaaagatgtaactt 67044
>emb|CR556696.19| Zebrafish DNA sequence from clone CH211-80J13 in linkage group 20, complete sequence Length = 130645 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tgtgctagtgaatgacaacg 45 |||||||||||||||||||| Sbjct: 71131 tgtgctagtgaatgacaacg 71112
>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5, complete sequence Length = 209796 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tacacacttgatacatatac 95 |||||||||||||||||||| Sbjct: 49955 tacacacttgatacatatac 49936
>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b, complete sequence Length = 84914 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 acatactgtgctagtgaatgacaa 43 |||||||||| ||||||||||||| Sbjct: 74278 acatactgtgttagtgaatgacaa 74255
>dbj|AP004546.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43N05, TM0178, complete sequence Length = 97268 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 acatactgtgctagtgaatgacaa 43 |||||||||| ||||||||||||| Sbjct: 40708 acatactgtgttagtgaatgacaa 40685
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acacacttgatacatataca 96 |||||||||||||||||||| Sbjct: 64556 acacacttgatacatataca 64575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,804,514 Number of Sequences: 3902068 Number of extensions: 1804514 Number of successful extensions: 111855 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111711 Number of HSP's gapped (non-prelim): 144 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)