>emb|AM039905.1| Hordeum vulgare mRNA for methionine synthase 2 enzyme (ms2 gene)
          Length = 2675

 Score =  567 bits (286), Expect = e-159
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                        
Query: 10   ttttcattcaactctgtttataaccgcgacaagaccacacaacctgtaaacaatgagacc 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 ttttcattcaactctgtttataaccgcgacaagaccacacaacctgtaaacaatgagacc 2579

                                                                        
Query: 70   acccaccaaacacatagaatacaacgtatgccatcaacatgtaacagttttaccataaca 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 acccaccaaacacatagaatacaacgtatgccatcaacatgtaacagttttaccataaca 2519

                                                                        
Query: 130  gcaggactaaccctagccagactcgggcggtacgataaagaatcggattattcgaaacaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 gcaggactaaccctagccagactcgggcggtacgataaagaatcggattattcgaaacaa 2459

                                                                        
Query: 190  acggctcgtttggcgctctgtccccacaaaacaataggtagtagtatcatcaggctgttc 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 acggctcgtttggcgctctgtccccacaaaacaataggtagtagtatcatcaggctgttc 2399

                                                          
Query: 250  gatttcatggctcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 gatttcatggctcctcacttcgtgctggcgagctgggtgcggatga 2353

>gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, full insert mRNA
            sequence
          Length = 2634

 Score =  155 bits (78), Expect = 9e-35
 Identities = 128/143 (89%), Gaps = 5/143 (3%)
 Strand = Plus / Minus

                                                                        
Query: 155  ggcggtacgataaagaatcggattattcgaaacaaacg--gctcgtttggcgctctgtcc 212
            |||||||||||||||||||||||||||||||||||| |  | || |||||| ||||||||
Sbjct: 2483 ggcggtacgataaagaatcggattattcgaaacaaatgtggatcatttggcactctgtcc 2424

                                                                        
Query: 213  ccacaaaacaataggtagtagtatcatcaggctgttcgatttcatggctcctcacttcgt 272
            ||||||||||||||| ||||||||||   ||||| ||| || | ||||||||||||| ||
Sbjct: 2423 ccacaaaacaataggcagtagtatca---ggctgctcgcttccgtggctcctcactttgt 2367

                                   
Query: 273  gctggcgagctgggtgcggatga 295
            |||||||||||||||||||||||
Sbjct: 2366 gctggcgagctgggtgcggatga 2344

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 261      tcctcacttcgtgctggcgagctgggtgcggatga 295
                ||||||||||| |||||||||||||||||||||||
Sbjct: 26684334 tcctcacttcgcgctggcgagctgggtgcggatga 26684300



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 261      tcctcacttcgtgctggcgagctgggtgcggatga 295
                ||||||||||| ||| |||||||||||||||||||
Sbjct: 26696184 tcctcacttcgcgctagcgagctgggtgcggatga 26696150

>dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163D13, full
            insert sequence
          Length = 2640

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| |||||||||||||||||||||||
Sbjct: 2371 tcctcacttcgcgctggcgagctgggtgcggatga 2337

>dbj|AK067958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E22, full
            insert sequence
          Length = 2058

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| |||||||||||||||||||||||
Sbjct: 1738 tcctcacttcgcgctggcgagctgggtgcggatga 1704

>dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J12, full
            insert sequence
          Length = 2668

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| |||||||||||||||||||||||
Sbjct: 2370 tcctcacttcgcgctggcgagctgggtgcggatga 2336

>dbj|AK062198.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G02, full
           insert sequence
          Length = 1064

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 261 tcctcacttcgtgctggcgagctgggtgcggatga 295
           ||||||||||| |||||||||||||||||||||||
Sbjct: 795 tcctcacttcgcgctggcgagctgggtgcggatga 761

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 261      tcctcacttcgtgctggcgagctgggtgcggatga 295
                ||||||||||| |||||||||||||||||||||||
Sbjct: 26612503 tcctcacttcgcgctggcgagctgggtgcggatga 26612469



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 261      tcctcacttcgtgctggcgagctgggtgcggatga 295
                ||||||||||| ||| |||||||||||||||||||
Sbjct: 26624353 tcctcacttcgcgctagcgagctgggtgcggatga 26624319

>emb|BX072547.2|CNS09S4Q Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0090N22
            of library OSJNBb from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 8623

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| |||||||||||||||||||||||
Sbjct: 2918 tcctcacttcgcgctggcgagctgggtgcggatga 2884

>dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H17, full
            insert sequence
          Length = 2627

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| ||| |||||||||||||||||||
Sbjct: 2371 tcctcacttcgcgctagcgagctgggtgcggatga 2337

>dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O11, full
            insert sequence
          Length = 2783

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 261  tcctcacttcgtgctggcgagctgggtgcggatga 295
            ||||||||||| ||| |||||||||||||||||||
Sbjct: 2490 tcctcacttcgcgctagcgagctgggtgcggatga 2456

>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 83015

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 261   tcctcacttcgtgctggcgagctgggtgcggatga 295
             ||||||||||| ||| |||||||||||||||||||
Sbjct: 74943 tcctcacttcgcgctagcgagctgggtgcggatga 74977

>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 104849

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 261    tcctcacttcgtgctggcgagctgggtgcggatga 295
              ||||||||||| ||| |||||||||||||||||||
Sbjct: 102794 tcctcacttcgcgctagcgagctgggtgcggatga 102828

>gb|AY109415.1| Zea mays CL598_2 mRNA sequence
          Length = 3017

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 263 ctcacttcgtgctggcgagctgggtgcggatga 295
           ||||||| | |||||||||||||||||||||||
Sbjct: 629 ctcacttggcgctggcgagctgggtgcggatga 661

>gb|BT016781.1| Zea mays clone Contig614 mRNA sequence
          Length = 1759

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 263  ctcacttcgtgctggcgagctgggtgcggatga 295
            |||| |||| |||| ||||||||||||||||||
Sbjct: 1405 ctcatttcgcgctgccgagctgggtgcggatga 1373

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 271     gtgctggcgagctgggtgcggatga 295
               ||||||||||||||||| |||||||
Sbjct: 1044878 gtgctggcgagctgggtccggatga 1044902

>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 263   ctcacttcgtgctggcgagctgggtgcggatga 295
             |||| |||| |||||| ||||||||||||||||
Sbjct: 72674 ctcatttcgcgctggcaagctgggtgcggatga 72706

>gb|AY111481.1| Zea mays CL598_4 mRNA sequence
          Length = 664

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 263 ctcacttcgtgctggcgagctgggtgcggatga 295
           |||| |||| |||| ||||||||||||||||||
Sbjct: 288 ctcatttcgcgctgccgagctgggtgcggatga 320

>gb|AY104793.1| Zea mays PCO079166 mRNA sequence
          Length = 2720

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 263  ctcacttcgtgctggcgagctgggtgcggatga 295
            |||| |||| |||||| ||||||||||||||||
Sbjct: 2411 ctcatttcgcgctggcaagctgggtgcggatga 2379

>dbj|AP004835.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-629D8, complete
             sequence
          Length = 134743

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   ctctgtccccacaaaacaata 225
             |||||||||||||||||||||
Sbjct: 82640 ctctgtccccacaaaacaata 82660

>emb|AL845311.9| Human DNA sequence from clone RP11-402N8 on chromosome 9 Contains a
             novel gene and a CpG island, complete sequence
          Length = 148407

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     attttcattcaactctgttt 28
             ||||||||||||||||||||
Sbjct: 80924 attttcattcaactctgttt 80943

>gb|AF082893.1| Solanum tuberosum methionine synthase (MS) mRNA, complete cds
          Length = 2644

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 263  ctcacttcgtgctggcgagctgggtgcggatg 294
            ||||||| | |||||||||||| |||||||||
Sbjct: 2355 ctcacttggcgctggcgagctgagtgcggatg 2324

>emb|BX833585.1|CNS09Z4M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL64ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 601

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 264 tcacttcgtgctggcgagctgggtgcggatga 295
           |||||| || ||||||||||||| ||||||||
Sbjct: 330 tcacttggtactggcgagctgggagcggatga 299

>gb|AC090286.16| Homo sapiens chromosome 17, clone RP11-28B23, complete sequence
          Length = 168956

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    ccaaacacatagaatacaac 94
             ||||||||||||||||||||
Sbjct: 60347 ccaaacacatagaatacaac 60328

>gb|AC003957.1|AC003957 Homo sapiens chromosome 17, clone hCIT.457_L_16, complete sequence
          Length = 126581

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    ccaaacacatagaatacaac 94
             ||||||||||||||||||||
Sbjct: 88873 ccaaacacatagaatacaac 88854

>emb|AJ009617.5|HSAJ9617 Homo sapiens chromosome 17 sequence from PAC RP1-149D14 and cosmid 40M01,
              complete sequence
          Length = 153609

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     ccaaacacatagaatacaac 94
              ||||||||||||||||||||
Sbjct: 128780 ccaaacacatagaatacaac 128761


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,204,544
Number of Sequences: 3902068
Number of extensions: 2204544
Number of successful extensions: 37523
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37466
Number of HSP's gapped (non-prelim): 55
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)