ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017514.1| Zea mays clone EL01N0419B06.c mRNA sequence 127 3e-26
2gb|AY108535.1| Zea mays PCO135925 mRNA sequence 119 8e-24
3ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group... 103 5e-19
4ref|XM_480154.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
6dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
7dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
8dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
9gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete seq... 84 5e-13
10emb|AJ223326.1|DCAJ3326 Daucus carota mRNA for DNA topoisomerase I 80 7e-12
11gb|U60440.1|DCU60440 Daucus carota topoisomerase I (Top1) mRNA, ... 68 3e-08
12ref|NM_124913.2| Arabidopsis thaliana TOP1 (TOPOISOMERASE I) AT5... 60 7e-06
13gb|AY080864.1| Arabidopsis thaliana putative DNA topoisomerase I... 60 7e-06
14ref|NM_124912.2| Arabidopsis thaliana DNA binding / DNA topoisom... 58 3e-05
15gb|AY090993.1| Arabidopsis thaliana putative DNA topoisomerase I... 58 3e-05
16emb|X57544.1|ATTOP1 A.thaliana TOP1 mRNA for topoisomerase I 58 3e-05
17dbj|AK221851.1| Arabidopsis thaliana mRNA for DNA topoisomerase ... 58 3e-05
18dbj|AK221766.1| Arabidopsis thaliana mRNA for DNA topoisomerase ... 58 3e-05
19dbj|AB015479.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 58 3e-05
20emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, ... 50 0.006
21emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, B... 50 0.006
22emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I 46 0.10
23gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, com... 44 0.40
24gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, comp... 44 0.40
25dbj|AP006084.1| Lotus japonicus genomic DNA, chromosome 3, clone... 44 0.40
26gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, comp... 40 6.2
27emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 i... 40 6.2
28emb|BX936443.15| Zebrafish DNA sequence from clone CH211-202H12 ... 40 6.2
29emb|CR356234.11| Zebrafish DNA sequence from clone CH211-93J11 i... 40 6.2
30emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chr... 40 6.2
31emb|BX544877.19| Zebrafish DNA sequence from clone CH211-202C4 i... 40 6.2
32emb|BX537303.10| Zebrafish DNA sequence from clone DKEYP-73E12, ... 40 6.2
33emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 6.2
34emb|BX629350.6| Zebrafish DNA sequence from clone CH211-155E13 i... 40 6.2
35gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete ... 40 6.2
36emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in... 40 6.2
37emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in... 40 6.2
38emb|BX470114.6| Zebrafish DNA sequence from clone CH211-168G7 in... 40 6.2
39emb|BX664628.5| Zebrafish DNA sequence from clone CH211-147D7 in... 40 6.2
40emb|BX649252.7| Zebrafish DNA sequence from clone DKEY-49M19 in ... 40 6.2
41emb|BX649299.5| Zebrafish DNA sequence from clone CH211-209E14 i... 40 6.2
42emb|AL732635.7| Zebrafish DNA sequence from clone CH211-231L18 i... 40 6.2
43emb|CR931725.6| Zebrafish DNA sequence from clone DKEY-22M10 in ... 40 6.2
44gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, co... 40 6.2
45emb|AL844899.33| Zebrafish DNA sequence from clone CH211-287K8 i... 40 6.2
46emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on ch... 40 6.2 
>gb|BT017514.1| Zea mays clone EL01N0419B06.c mRNA sequence
          Length = 522

 Score =  127 bits (64), Expect = 3e-26
 Identities = 121/140 (86%)
 Strand = Plus / Plus

                                                                       
Query: 318 tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 377
           ||||||||||| ||||| || || |||||||||||| |||| || || || |  |  |||
Sbjct: 287 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 346

                                                                       
Query: 378 ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagga 437
            |||||||||||||||||||||||||||||  |||||||||||| || || |||||||||
Sbjct: 347 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagga 406

                               
Query: 438 tcaaggtagttgatctttga 457
           ||||||||||||||||||||
Sbjct: 407 tcaaggtagttgatctttga 426



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                          
Query: 147 gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 191
           |||||||||||||||| ||||||| ||||||| ||||| ||||||||
Sbjct: 119 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 165



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 aaaaaacaaacaccgagctctt 220
           ||||||||||||||||||||||
Sbjct: 181 aaaaaacaaacaccgagctctt 202
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>gb|AY108535.1| Zea mays PCO135925 mRNA sequence
          Length = 1700

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 318  tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 377
            ||||||||||| ||||| || || |||||||||||| |||| || || || |  |  |||
Sbjct: 1382 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 1323

                                                                        
Query: 378  ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagga 437
             |||||||||||||||||||||||||||||  |||||||||||| || || |||||||||
Sbjct: 1322 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagga 1263

                                
Query: 438  tcaaggtagttgatctttga 457
            ||||| ||||||||||||||
Sbjct: 1262 tcaagatagttgatctttga 1243



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Minus

                                                           
Query: 147  gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 191
            |||||||||||||||| ||||||| ||||||| ||||| ||||||||
Sbjct: 1550 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 1504



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 199  aaaaaacaaacaccgagctctt 220
            ||||||||||||||||||||||
Sbjct: 1488 aaaaaacaaacaccgagctctt 1467
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>ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1066_B03.125 mRNA
          Length = 3327

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 147  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 205
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114

                                
Query: 206  aaacaccgagctcttccttt 225
            ||||||||||||||||||||
Sbjct: 3113 aaacaccgagctcttccttt 3094



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 120/144 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 373
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944

                                                                        
Query: 374  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 433
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884

                                    
Query: 434  aggatcaaggtagttgatctttga 457
             ||||||||||| |||||||||||
Sbjct: 2883 gggatcaaggtaattgatctttga 2860



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 11   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 71   tgtcggcccaaatgca 86
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228
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>ref|XM_480154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3327

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 147  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 205
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114

                                
Query: 206  aaacaccgagctcttccttt 225
            ||||||||||||||||||||
Sbjct: 3113 aaacaccgagctcttccttt 3094



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 120/144 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 373
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944

                                                                        
Query: 374  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 433
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884

                                    
Query: 434  aggatcaaggtagttgatctttga 457
             ||||||||||| |||||||||||
Sbjct: 2883 gggatcaaggtaattgatctttga 2860



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 11   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 71   tgtcggcccaaatgca 86
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                           
Query: 147     gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 205
               |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3136305 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3136248

                                   
Query: 206     aaacaccgagctcttccttt 225
               ||||||||||||||||||||
Sbjct: 3136247 aaacaccgagctcttccttt 3136228



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                           
Query: 11      tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
               |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3136437 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3136378

                               
Query: 71      tgtcggcccaaatgca 86
                 || |||||||||||
Sbjct: 3136377 cctcagcccaaatgca 3136362



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                           
Query: 386     cttctcaatagggacttcatgggttttgcaccatgctaccgtaattctaggatcaaggta 445
               |||||| || || |||||||||  |||||||||||| || |||||||| |||||||||||
Sbjct: 3135762 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattctgggatcaaggta 3135703

                           
Query: 446     gttgatctttga 457
                |||||||||||
Sbjct: 3135702 attgatctttga 3135691



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                      
Query: 314     ctcttagaatctgaaatccggctcgacatccattgccca 352
               |||||| |||||||||||||| ||||| |||||||||||
Sbjct: 3136137 ctcttaaaatctgaaatccgggtcgacgtccattgccca 3136099
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>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                         
Query: 147   gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 205
             |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 95789 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 95732

                                 
Query: 206   aaacaccgagctcttccttt 225
             ||||||||||||||||||||
Sbjct: 95731 aaacaccgagctcttccttt 95712



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 11    tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
             |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 95921 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 95862

                             
Query: 71    tgtcggcccaaatgca 86
               || |||||||||||
Sbjct: 95861 cctcagcccaaatgca 95846



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 386   cttctcaatagggacttcatgggttttgcaccatgctaccgtaattctaggatcaaggta 445
             |||||| || || |||||||||  |||||||||||| || |||||||| |||||||||||
Sbjct: 95246 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattctgggatcaaggta 95187

                         
Query: 446   gttgatctttga 457
              |||||||||||
Sbjct: 95186 attgatctttga 95175



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 314   ctcttagaatctgaaatccggctcgacatccattgccca 352
             |||||| |||||||||||||| ||||| |||||||||||
Sbjct: 95621 ctcttaaaatctgaaatccgggtcgacgtccattgccca 95583
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>dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050E19, full
            insert sequence
          Length = 3326

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 147  gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 205
            |||||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 3170 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3113

                                
Query: 206  aaacaccgagctcttccttt 225
            ||||||||||||||||||||
Sbjct: 3112 aaacaccgagctcttccttt 3093



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 120/144 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 373
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3002 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2943

                                                                        
Query: 374  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 433
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2942 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2883

                                    
Query: 434  aggatcaaggtagttgatctttga 457
             ||||||||||| |||||||||||
Sbjct: 2882 gggatcaaggtaattgatctttga 2859



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 11   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3302 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3243

                            
Query: 71   tgtcggcccaaatgca 86
              || |||||||||||
Sbjct: 3242 cctcagcccaaatgca 3227
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>dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full
            insert sequence
          Length = 3347

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/80 (95%), Gaps = 3/80 (3%)
 Strand = Plus / Minus

                                                                        
Query: 147  gcctacaaagagaatgccgggtgcttcctt-cttccaggagcagggagacttcaaaaaac 205
            |||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct: 3191 gcctacaatgagaatgccgggtgcttccttccttccaggagcaggg-gacttc-aaaaac 3134

                                
Query: 206  aaacaccgagctcttccttt 225
            ||||||||||||||||||||
Sbjct: 3133 aaacaccgagctcttccttt 3114



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 120/144 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 373
            |||||| |||||||||||||| ||||| |||||||||||   ||| || ||||  |  | 
Sbjct: 3023 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2964

                                                                        
Query: 374  cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 433
             ||| ||||||||||||| || || |||||||||  |||||||||||| || ||||||||
Sbjct: 2963 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2904

                                    
Query: 434  aggatcaaggtagttgatctttga 457
             ||||||||||| |||||||||||
Sbjct: 2903 gggatcaaggtaattgatctttga 2880



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 11   tatatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 70
            |||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3323 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3264

                            
Query: 71   tgtcggcccaaatgca 86
              || |||||||||||
Sbjct: 3263 cctcagcccaaatgca 3248
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>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence
          Length = 138518

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 71/78 (91%), Gaps = 2/78 (2%)
 Strand = Plus / Minus

                                                                          
Query: 147    gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagac-ttcaaaaaa 204
              ||||||||||||||||||  ||||||||||| |||||||||||||| ||| || ||||||
Sbjct: 106729 gcctacaaagagaatgccaagtgcttccttcgttccaggagcagggggacattgaaaaaa 106670

                                
Query: 205    caaacaccgagctcttcc 222
              ||||| ||||||||||||
Sbjct: 106669 caaactccgagctcttcc 106652
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>emb|AJ223326.1|DCAJ3326 Daucus carota mRNA for DNA topoisomerase I
          Length = 3086

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 118/144 (81%)
 Strand = Plus / Minus

                                                                        
Query: 317  ttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtctt 376
            ||||||||||||   |||||| ||||||||||||||  |||||||||| ||||  | |||
Sbjct: 2855 ttagaatctgaagctcggctcaacatccattgcccaggcaaactttgccagaagagactt 2796

                                                                        
Query: 377  gctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagg 436
            | |||| ||||||||||| || |||||||     |||||||| ||||| ||||| |||||
Sbjct: 2795 gttgaacatcttctcaatgggaacttcataccgcttgcaccaagctacggtaatcctagg 2736

                                    
Query: 437  atcaaggtagttgatctttgatgt 460
            |||||| || || || ||||||||
Sbjct: 2735 atcaagataatttatttttgatgt 2712
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>gb|U60440.1|DCU60440 Daucus carota topoisomerase I (Top1) mRNA, complete cds
          Length = 2803

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Minus

                                                                        
Query: 339  acatccattgcccatccaaactttgcaagaatcgtcttgctgaaaatcttctcaataggg 398
            |||||||| |||||  |||| ||||| ||||  | |||| |||| |||||||||||||| 
Sbjct: 2625 acatccatagcccaagcaaattttgccagaagagacttgttgaatatcttctcaatagga 2566

                                                                        
Query: 399  acttcatgggttttgcaccatgctaccgtaattctaggatcaaggtagttgatctttgat 458
            || |||||    |||||||| || || ||||| |||||||||||||| || |||||||||
Sbjct: 2565 acgtcatgccgcttgcaccaagcgactgtaatcctaggatcaaggtaattaatctttgat 2506

              
Query: 459  gt 460
            ||
Sbjct: 2505 gt 2504
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>ref|NM_124913.2| Arabidopsis thaliana TOP1 (TOPOISOMERASE I) AT5G55310 (TOP1) mRNA,
            complete cds
          Length = 2838

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 114/142 (80%)
 Strand = Plus / Minus

                                                                        
Query: 319  agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 378
            |||||||||| || || || ||||||||||||||  | ||||| || ||||  | |||| 
Sbjct: 2818 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 2759

                                                                        
Query: 379  tgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctaggat 438
            | || ||||||||||| ||||| |||||   ||||||||| || || || || |||||||
Sbjct: 2758 taaatatcttctcaatggggacatcatgtcgtttgcaccacgcaacagtgatcctaggat 2699

                                  
Query: 439  caaggtagttgatctttgatgt 460
            | | |||||||||||| |||||
Sbjct: 2698 ccatgtagttgatcttagatgt 2677
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>gb|AY080864.1| Arabidopsis thaliana putative DNA topoisomerase I (At5g55310) mRNA,
           partial cds
          Length = 928

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 114/142 (80%)
 Strand = Plus / Minus

                                                                       
Query: 319 agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 378
           |||||||||| || || || ||||||||||||||  | ||||| || ||||  | |||| 
Sbjct: 681 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 622

                                                                       
Query: 379 tgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctaggat 438
           | || ||||||||||| ||||| |||||   ||||||||| || || || || |||||||
Sbjct: 621 taaatatcttctcaatggggacatcatgtcgtttgcaccacgcaacagtgatcctaggat 562

                                 
Query: 439 caaggtagttgatctttgatgt 460
           | | |||||||||||| |||||
Sbjct: 561 ccatgtagttgatcttagatgt 540
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>ref|NM_124912.2| Arabidopsis thaliana DNA binding / DNA topoisomerase type I AT5G55300
            mRNA, complete cds
          Length = 3089

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 410  tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
            |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 2736 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 2692
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>gb|AY090993.1| Arabidopsis thaliana putative DNA topoisomerase I (At5g55300) mRNA,
            partial cds
          Length = 1830

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 410  tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
            |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 1444 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 1400
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>emb|X57544.1|ATTOP1 A.thaliana TOP1 mRNA for topoisomerase I
          Length = 3106

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 410  tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
            |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 2737 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 2693
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>dbj|AK221851.1| Arabidopsis thaliana mRNA for DNA topoisomerase I, partial cds,
           clone: RAFL22-07-H10
          Length = 1078

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 410 tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
           |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 713 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 669
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>dbj|AK221766.1| Arabidopsis thaliana mRNA for DNA topoisomerase I, partial cds,
            clone: RAFL21-62-I21
          Length = 1452

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 410  tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
            |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 1090 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 1046
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>dbj|AB015479.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTE17
          Length = 80675

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 410 tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
           |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 820 tttgcaccatgcaactgtgattctaggatccaggtagttgatctt 864



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                        
Query: 386  cttctcaatagggacttcatgggttttgcaccatgctaccgtaattctaggatcaaggta 445
            ||||||||| ||||| |||||   ||||||||| || || || || |||||||| | |||
Sbjct: 6349 cttctcaatggggacatcatgtcgtttgcaccacgcaacagtgatcctaggatccatgta 6408

                           
Query: 446  gttgatctttgatgt 460
            ||||||||| |||||
Sbjct: 6409 gttgatcttagatgt 6423
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>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65
          Length = 198320

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 410    tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
              |||||||||||| ||||| || |||||||| | ||||||||||||
Sbjct: 165037 tttgcaccatgcgaccgtgatcctaggatccatgtagttgatctt 164993
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>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project)
          Length = 128574

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 410   tttgcaccatgctaccgtaattctaggatcaaggtagttgatctt 454
             |||||||||||| ||||| || |||||||| | ||||||||||||
Sbjct: 15874 tttgcaccatgcgaccgtgatcctaggatccatgtagttgatctt 15830
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>emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I
          Length = 3055

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 319  agaatctgaaatccggctcgacatccattgcccatccaaactttgca 365
            ||||||||||||| || || ||||||||||||||  |||| ||||||
Sbjct: 2838 agaatctgaaatctgggtccacatccattgcccaagcaaattttgca 2792
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>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence
          Length = 183026

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 304    gaatccaatactcttagaatct 325
              ||||||||||||||||||||||
Sbjct: 125538 gaatccaatactcttagaatct 125559
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>gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, complete sequence
          Length = 130226

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 304   gaatccaatactcttagaatct 325
             ||||||||||||||||||||||
Sbjct: 14940 gaatccaatactcttagaatct 14961
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>dbj|AP006084.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT44D21, TM0127b,
             complete sequence
          Length = 95169

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 411   ttgcaccatgctaccgtaattctaggatcaaggtagttgatctttgatgt 460
             |||||||| || || ||||| || |||||||||||||| ||||| |||||
Sbjct: 27679 ttgcaccaggcgactgtaatcctgggatcaaggtagtttatcttggatgt 27630
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>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence
          Length = 159888

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gttctcaacaagctaaaatt 70
              ||||||||||||||||||||
Sbjct: 147046 gttctcaacaagctaaaatt 147027
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>emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 in linkage group 8,
              complete sequence
          Length = 175313

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 140242 ttaggtgtccgagagaaggc 140261
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>emb|BX936443.15| Zebrafish DNA sequence from clone CH211-202H12 in linkage group 17,
             complete sequence
          Length = 119991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 72249 ttaggtgtccgagagaaggc 72230



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 68279 ttaggtgtccgagagaaggc 68260
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>emb|CR356234.11| Zebrafish DNA sequence from clone CH211-93J11 in linkage group 2,
            complete sequence
          Length = 151567

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  ttaggtgtccgagagaaggc 259
            ||||||||||||||||||||
Sbjct: 8384 ttaggtgtccgagagaaggc 8403
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>emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chromosome 9 Contains a
              programmed cell death 2 (PDCD2) pseudogene, the 5' end of
              the gene for a novel C2H2 type zinc finger protein and two
              CpG islands, complete sequence
          Length = 184302

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    ccttcttccaggagcagggagact 196
              |||||| |||||||||||||||||
Sbjct: 181615 ccttctcccaggagcagggagact 181592
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>emb|BX544877.19| Zebrafish DNA sequence from clone CH211-202C4 in linkage group 25,
             complete sequence
          Length = 144487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 93216 ttaggtgtccgagagaaggc 93235
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>emb|BX537303.10| Zebrafish DNA sequence from clone DKEYP-73E12, complete sequence
          Length = 204522

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 172415 ttaggtgtccgagagaaggc 172396
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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 52116 ttaggtgtccgagagaaggc 52135
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>emb|BX629350.6| Zebrafish DNA sequence from clone CH211-155E13 in linkage group 10,
              complete sequence
          Length = 185084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 126138 ttaggtgtccgagagaaggc 126157
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>gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete sequence
          Length = 157183

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   aatcttctcaatagggactt 402
             ||||||||||||||||||||
Sbjct: 77018 aatcttctcaatagggactt 77037
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>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete
              sequence
          Length = 194418

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 144259 ttaggtgtccgagagaaggc 144240
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>emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in linkage group 20,
              complete sequence
          Length = 125366

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 109060 ttaggtgtccgagagaaggc 109079
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>emb|BX470114.6| Zebrafish DNA sequence from clone CH211-168G7 in linkage group 4,
             complete sequence
          Length = 138545

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 67002 ttaggtgtccgagagaaggc 66983
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>emb|BX664628.5| Zebrafish DNA sequence from clone CH211-147D7 in linkage group 20,
             complete sequence
          Length = 101135

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 70206 ttaggtgtccgagagaaggc 70225
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>emb|BX649252.7| Zebrafish DNA sequence from clone DKEY-49M19 in linkage group 22,
              complete sequence
          Length = 205949

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ttaggtgtccgagagaaggc 259
              ||||||||||||||||||||
Sbjct: 134089 ttaggtgtccgagagaaggc 134070
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>emb|BX649299.5| Zebrafish DNA sequence from clone CH211-209E14 in linkage group 20,
             complete sequence
          Length = 199740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 79864 ttaggtgtccgagagaaggc 79845
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>emb|AL732635.7| Zebrafish DNA sequence from clone CH211-231L18 in linkage group 7,
             complete sequence
          Length = 83703

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 80934 ttaggtgtccgagagaaggc 80953
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>emb|CR931725.6| Zebrafish DNA sequence from clone DKEY-22M10 in linkage group 11,
             complete sequence
          Length = 205299

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 42118 ttaggtgtccgagagaaggc 42137
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>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence
          Length = 178509

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     gttctcaacaagctaaaatt 70
              ||||||||||||||||||||
Sbjct: 177459 gttctcaacaagctaaaatt 177478
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>emb|AL844899.33| Zebrafish DNA sequence from clone CH211-287K8 in linkage group 5,
             complete sequence
          Length = 167857

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttaggtgtccgagagaaggc 259
             ||||||||||||||||||||
Sbjct: 32825 ttaggtgtccgagagaaggc 32806
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>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete
             sequence
          Length = 216611

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aatgtccatcagttctcaac 59
             ||||||||||||||||||||
Sbjct: 45954 aatgtccatcagttctcaac 45973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,700,199
Number of Sequences: 3902068
Number of extensions: 4700199
Number of successful extensions: 92004
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91851
Number of HSP's gapped (non-prelim): 135
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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