ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL21_PRVN3 (Q00703) Protein UL21 homolog 29 2.5
2NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 pr... 28 5.6

>UL21_PRVN3 (Q00703) Protein UL21 homolog|
          Length = 523

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 245 GDVSRLIISTCMVHAPACLDRSGLRRP 325
           G+V R++++  +VHAPA  D +G   P
Sbjct: 384 GEVMRMLVNAAVVHAPAIADPAGASPP 410



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>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2321

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 23/82 (28%), Positives = 32/82 (39%)
 Frame = +2

Query: 101 VRSL*LKPLIMMTTATTPAQINQSSNLNQRHCMQLHANPSACTYPRGCGDVSRLIISTCM 280
           VR+L L  L+    A  P  ++ S   N   C QL +  +AC  P G       +   C 
Sbjct: 24  VRALPLLLLLAGPGAAAPPCLDGSPCANGGRCTQLPSREAACLCPPGWVGERCQLEDPC- 82

Query: 281 VHAPACLDRSGLRRPCAPGTGR 346
            H+  C  R   +     GT R
Sbjct: 83  -HSGPCAGRGVCQSSVVAGTAR 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,455,537
Number of Sequences: 219361
Number of extensions: 784504
Number of successful extensions: 1750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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