ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INSR_AEDAE (Q93105) Insulin-like receptor precursor (EC 2.7.10.1... 32 0.52
2COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor 30 1.5
3COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion pro... 29 2.6
4UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrola... 29 2.6
5YFEO_SHIFL (P59585) Putative ion-transport protein yfeO 29 3.4
6YFEO_ECOLI (P67729) Putative ion-transport protein yfeO 29 3.4
7YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO 29 3.4
8YFEO_ECO57 (P67730) Putative ion-transport protein yfeO 29 3.4
9PA1_PROVU (P37447) Phospholipase A1 precursor (EC 3.1.1.32) (EC ... 29 3.4
10BCAL1_ARATH (Q8W0Z7) Branched-chain-amino-acid aminotransferase-... 28 5.8
11POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48) 28 5.8
12SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.5
13SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 7.5
14PKNI_MYCTU (P65730) Probable serine/threonine-protein kinase pkn... 28 7.5
15PKNI_MYCBO (P65731) Probable serine/threonine-protein kinase pkn... 28 7.5
16TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subuni... 27 9.8
17ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adre... 27 9.8
18TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subuni... 27 9.8

>INSR_AEDAE (Q93105) Insulin-like receptor precursor (EC 2.7.10.1) (MIR)|
           [Contains: Insulin-like receptor alpha chain;
           Insulin-like receptor beta chain]
          Length = 1390

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
 Frame = -1

Query: 112 VRTRTVGTSGV-------YFTTAPSLPSLLRKLCVSRNE 17
           V+T T+G+ G+       YFTTAP  PS++R + VS N+
Sbjct: 599 VKTYTLGSEGLGGQSKIKYFTTAPGTPSVVRDVEVSVNK 637



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>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor|
          Length = 431

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 289 HIVCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 149
           H +CP+RV W     +      K+  T+  +R +HT W L   + NL
Sbjct: 273 HHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNL 319



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>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)|
          Length = 456

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 283 VCPLRVLWFTARVWTHILLRKL*RTDLVHRSSHTRWGLERDYRNL 149
           +CP+RV W   + +      K+  T+  +R ++T+W L   + NL
Sbjct: 297 MCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVAQHPNL 341



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>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 112 PTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKCG 240
           PT + C + D+  S YN     T YG    L+L + +    CG
Sbjct: 186 PTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCG 228



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>YFEO_SHIFL (P59585) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 215 LQFSQ*NVGPDPSCEP 262
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECOLI (P67729) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 215 LQFSQ*NVGPDPSCEP 262
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECOL6 (Q8FFD3) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 215 LQFSQ*NVGPDPSCEP 262
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>YFEO_ECO57 (P67730) Putative ion-transport protein yfeO|
          Length = 418

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 215 LQFSQ*NVGPDPSCEP 262
           ++FSQ + GPDP+CEP
Sbjct: 74  IRFSQGHAGPDPACEP 89



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>PA1_PROVU (P37447) Phospholipase A1 precursor (EC 3.1.1.32) (EC 3.1.1.4)|
           (Detergent-resistant phospholipase A) (DR-phospholipase
           A) (Phosphatidylcholine 1-acylhydrolase) (Outer membrane
           phospholipase A) (OM PLA)
          Length = 289

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 174 VWRGIIGT*SYVCYSAMQRGWFEPGPLAQVGCTSPLRQ 61
           +WRGI+G  S +  S  QR W++   L+  G ++P R+
Sbjct: 97  LWRGILGDNSLLGASYTQRSWWQ---LSNTGESAPFRE 131



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>BCAL1_ARATH (Q8W0Z7) Branched-chain-amino-acid aminotransferase-like protein 1|
           (Atbcat-like)
          Length = 555

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 175 GLERDYRNLVLCLLQCNAERLVRTRTVGT 89
           G +R YR+ VL  ++CN E++V+    G+
Sbjct: 46  GFDRPYRDEVLSKMECNGEKVVKDVIYGS 74



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>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 94   QRSWFE-PTSLHCTVADIRLSSYNPSPDPTL 183
            Q  WF+ P SL C  + +  + ++PS DPTL
Sbjct: 1404 QFPWFDRPFSLSCQPSSLIAAKHSPSQDPTL 1434



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>SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 WFEPTSLHCTVADIRLSSYNPSPDPTLYGS 192
           WF+  S H +V D+R      SPD  L GS
Sbjct: 534 WFDSGSTHSSVVDVRPEFGGHSPDMYLEGS 563



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>SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 WFEPTSLHCTVADIRLSSYNPSPDPTLYGS 192
           WF+  S H +V D+R      SPD  L GS
Sbjct: 534 WFDSGSTHSSVVDVRPEFGGHSPDMYLEGS 563



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>PKNI_MYCTU (P65730) Probable serine/threonine-protein kinase pknI (EC|
           2.7.11.1)
          Length = 585

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +1

Query: 58  GLAQW*STPHLCQRSWFEPTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237
           G  QW S P   Q     P     T A  +L +  P P   L G     ++  TV S +C
Sbjct: 476 GEGQWKSRPETVQFPCVGPNGSPSTQATTQLLALRPQPQGDLVG-----EMVVTVHSNEC 530

Query: 238 GSR 246
           G +
Sbjct: 531 GQQ 533



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>PKNI_MYCBO (P65731) Probable serine/threonine-protein kinase pknI (EC|
           2.7.11.1)
          Length = 585

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +1

Query: 58  GLAQW*STPHLCQRSWFEPTSLHCTVADIRLSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237
           G  QW S P   Q     P     T A  +L +  P P   L G     ++  TV S +C
Sbjct: 476 GEGQWKSRPETVQFPCVGPNGSPSTQATTQLLALRPQPQGDLVG-----EMVVTVHSNEC 530

Query: 238 GSR 246
           G +
Sbjct: 531 GQQ 533



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>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 148 LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237
           LS+YN   DPT+Y  +Y+    F   S+ C
Sbjct: 202 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 231



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>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 389

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 192 LLCTRSVLYSF---LNKMWVQTRAVNHNTRR 275
           L CT S+++     L++ W  TRA+ +NT+R
Sbjct: 81  LFCTSSIVHLCAISLDRYWAVTRALEYNTKR 111



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>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 148 LSSYNPSPDPTLYGSFYALDLSFTVFSIKC 237
           LS+YN   DPT+Y  +Y+    F   S+ C
Sbjct: 203 LSAYNQQGDPTMYEEYYSGLKHFIECSLDC 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,740,994
Number of Sequences: 219361
Number of extensions: 1127391
Number of successful extensions: 2396
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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