ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05g05 |
|---|---|
| Clone Library Name | barley_pub |
>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3| precursor Length = 556 Score = 33.9 bits (76), Expect = 0.17 Identities = 28/96 (29%), Positives = 42/96 (43%) Frame = +2 Query: 17 LQFYFDAHNVLSSVRRIFCKAGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLA 196 + Y +A +SSV K GSST + SS+ S+ QI+ T S M+A Sbjct: 126 MNVYVNAETFVSSVESSSSKEGSSTSYMPSTTSSL--SSAQISSTTRRTSTDMKSSEMIA 183 Query: 197 TFSNFSRARSTSAGDATADTEPGTTRRSLWSSGGDS 304 T + + S+S T+ T TT + S+ S Sbjct: 184 TTVSTTSTTSSSTSSTTSSTTSSTTSSTTSSTTSSS 219
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 32.7 bits (73), Expect = 0.38 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 16/123 (13%) Frame = +2 Query: 92 PENQDSGSSICR-----STWQIALRYPLCCTSSGSFSMLATFSNFSRARSTSAGDAT--- 247 P NQD G+ + T QI LR PL C S L + S G+A Sbjct: 260 PRNQDIGALLANRLITLKTKQIFLRSPLTCKSMNWICQLCYGWSLSHGNLIEMGEAVGII 319 Query: 248 ---ADTEPGT--TRRSLWSSG---GDSAHCIAQMERGRM*CSDRYPPPASDVHASGVWNA 403 + EPGT T R+ + G GD A + G + ++ + P H W Sbjct: 320 AGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGIIEFNENFVYPTRTRHGHPAWMC 379 Query: 404 YPN 412 + N Sbjct: 380 HTN 382
>HID_DROME (Q24106) Cell death protein W (Protein head involution defective)| (Protein wrinkled) Length = 410 Score = 30.4 bits (67), Expect = 1.9 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 17/135 (12%) Frame = +2 Query: 77 AGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLATFSNFSRARSTSAGDATADT 256 +G+S+P N SS S +SSG S A+ ++ S + S+ + A Sbjct: 23 SGNSSPHNHPLPSSASSSV-----------SSSGVSSASASSASSSSSASSDGASSAASQ 71 Query: 257 EPGTTRRSLWSSGGDSAHCIAQM-----ERGRM*CSD-------RYPPPASDVHASG--- 391 P TT S + S Q+ E RM S +YPPP+ + +G Sbjct: 72 SPNTTTSSATQTPMQSPLPTDQVLYALYEWVRMYQSQQSAPQIFQYPPPSPSCNFTGGDV 131 Query: 392 -VWNAYPNP-SLPHP 430 + +PNP S PHP Sbjct: 132 FFPHGHPNPNSNPHP 146
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 352 PVPAAGVGRPRFRRLERVPEPVPAPP 429 PVP+ G PRF P P P PP Sbjct: 192 PVPSGGSSSPRFLPRGNAPSPAPPPP 217
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 29.6 bits (65), Expect = 3.2 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Frame = +2 Query: 71 CKAGSSTPENQDSGSSICRSTWQIALRYPLCCTSSGSFSMLATFSNFSRARST-SAGDAT 247 C+ G + PE + + S+ + + + +G+ S+ FSN S T S G AT Sbjct: 4720 CRTGPAPPEGLQAPTFHTVSSTRAVVNISVPSRPNGNISLFRVFSNSSGTHVTLSEGTAT 4779 Query: 248 ADTEPGTTRRSLWSSGGDSAHCIAQMERGRM*CSDRYPPPAS 373 T + + ++ G ++ C RG +P P S Sbjct: 4780 QQTLHDLSPFTTYTIGVEACTCFNCCSRGPTAELRTHPAPPS 4821
>RCEL_RHORU (P10717) Reaction center protein L chain (Photosynthetic reaction| center L subunit) Length = 275 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -3 Query: 426 WGRDGFGYAFQTPEAWTSDAGGGYRSLHY 340 WG GF Y F T W S+ G Y + HY Sbjct: 142 WGY-GFPYGFMTHLDWVSNTGYQYANFHY 169
>CSW_DROVI (Q24708) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 764 Score = 28.5 bits (62), Expect = 7.2 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 212 SRARSTSAGDATADTEPGT-TRRSLWSSGGDSAHCIAQMERGRM*CSDRYPPPASDVHAS 388 S + S SA + A T PGT T S+ C+A + + C D PPP++ S Sbjct: 251 SESMSASANASAAGTGPGTPTAAGNTSAAAALNGCLAVLLKKH--CGDASPPPSTTSSCS 308 Query: 389 G 391 G Sbjct: 309 G 309
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 346 QRPVPAAGVGRPRFRRLERVPEPVPAPP 429 ++P+P +G R +R +R PEP P P Sbjct: 1728 EQPLPPGPIGTERSQRTDRGPEPGPLRP 1755
>HIS3_NATPD (Q3IMJ0) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)| Length = 120 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = +2 Query: 173 SGSFSMLATFSNFSRARSTSAGDATADTEPGTTRRSLWSSGGDSAHCIAQMERGRM*C 346 SG MLA S + ARS G A + +R LW GG S H ++E R+ C Sbjct: 22 SGDVLMLAYVSEEAVARSRETGYAHYYSR---SREELWKKGGSSGH-TQEIEEIRVDC 75
>GSPK_PECCC (P31706) General secretion pathway protein K (Pectic enzymes| secretion protein OUTK) Length = 328 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +1 Query: 187 HARHLLELLPRQVHLRWRRYGGHRTRN 267 H R LL L ++V + R+YGG+RT N Sbjct: 301 HQRSLLHLSGQKVQVVQRQYGGYRTVN 327
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 346 QRPVPAAGVGRPRFRRLERVPEPVPAPP 429 ++P+P +G R +R +R PEP P P Sbjct: 1724 EQPLPPGPIGTERSQRTDRGPEPGPLRP 1751 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,475,444 Number of Sequences: 219361 Number of extensions: 1043249 Number of successful extensions: 3391 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3386 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
