Clone Name | rbastl05g05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3088 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Minus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 2819 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 2760 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 2759 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 2706 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 2705 tagccgaagccgtgcttgccccagccgg 2678 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 2937 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 2878 Query: 214 c 214 | Sbjct: 2877 c 2877
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Plus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 574288 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 574347 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 574348 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 574401 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 574402 tagccgaagccgtgcttgccccagccgg 574429 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 574170 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 574229 Query: 214 c 214 | Sbjct: 574230 c 574230
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Plus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 164248 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 164307 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 164308 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 164361 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 164362 tagccgaagccgtgcttgccccagccgg 164389 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 164130 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 164189 Query: 214 c 214 | Sbjct: 164190 c 164190
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Plus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 1666 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 1725 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 1726 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 1779 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 1780 tagccgaagccgtgcttgccccagccgg 1807 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 1548 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 1607 Query: 214 c 214 | Sbjct: 1608 c 1608
>dbj|AK073257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022F02, full insert sequence Length = 1209 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Minus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 894 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 835 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 834 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 781 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 780 tagccgaagccgtgcttgccccagccgg 753 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 1012 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 953 Query: 214 c 214 | Sbjct: 952 c 952
>dbj|AK072300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020B06, full insert sequence Length = 3088 Score = 113 bits (57), Expect = 5e-22 Identities = 125/148 (84%), Gaps = 6/148 (4%) Strand = Plus / Minus Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343 |||||| |||||||||| |||||||||||||||||||||| | ||| || ||||||||| Sbjct: 2819 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 2760 Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403 ||||||| |||||| |||| |||||| |||||||| |||||||||||||||||| Sbjct: 2759 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 2706 Query: 404 tacccgaacccgtccctgccccacccgg 431 || ||||| |||| | ||||||| |||| Sbjct: 2705 tagccgaagccgtgcttgccccagccgg 2678 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 154 ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213 ||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| Sbjct: 2937 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 2878 Query: 214 c 214 | Sbjct: 2877 c 2877
>gb|AC105074.5| Homo sapiens chromosome 18, clone RP11-693M3, complete sequence Length = 118724 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 aactattgcagttttattttg 32 ||||||||||||||||||||| Sbjct: 114604 aactattgcagttttattttg 114624
>gb|AC015954.9| Homo sapiens chromosome 18, clone RP11-24L5, complete sequence Length = 180507 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 aactattgcagttttattttg 32 ||||||||||||||||||||| Sbjct: 137021 aactattgcagttttattttg 137001
>ref|XM_308260.2| Anopheles gambiae str. PEST ENSANGP00000009343 (ENSANGG00000006992), partial mRNA Length = 3462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 cccttgtgctgcacttcctcc 175 ||||||||||||||||||||| Sbjct: 2012 cccttgtgctgcacttcctcc 1992
>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan, 300kDa) (TGFBR3) gene, complete cds Length = 226174 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 55 agtccgaagaatcttttgtaaagctgga 82 |||| ||||||| ||||||||||||||| Sbjct: 160934 agtctgaagaattttttgtaaagctgga 160961
>ref|XM_947535.1| Theileria annulata strain Ankara hypothetical protein (TA14670) partial mRNA Length = 2112 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ccaccttctcgaacttctcc 214 |||||||||||||||||||| Sbjct: 772 ccaccttctcgaacttctcc 753
>emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on chromosome 1 Contains part of the TGFBR3 gene fortransforming growth factor, beta receptor III (betaglycan, 300kDa), complete sequence Length = 34325 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 55 agtccgaagaatcttttgtaaagctgga 82 |||| ||||||| ||||||||||||||| Sbjct: 32716 agtctgaagaattttttgtaaagctgga 32689
>emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chromosome 1p21.2-22.3 Contains part of the TGFBR3 gene fortransforming growth factor, beta receptor III (betaglycan, 300kDa), complete sequence Length = 71955 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 55 agtccgaagaatcttttgtaaagctgga 82 |||| ||||||| ||||||||||||||| Sbjct: 391 agtctgaagaattttttgtaaagctgga 364
>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete sequence Length = 160298 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 taccccttgtgctgcacttcctcc 175 ||||||||||| |||||||||||| Sbjct: 136277 taccccttgtgatgcacttcctcc 136254
>emb|AJ720463.1| Gallus gallus mRNA for hypothetical protein, clone 18e10 Length = 3121 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 atgaaagtaactattgcagtttta 27 ||||||||||||| |||||||||| Sbjct: 1928 atgaaagtaactactgcagtttta 1951
>emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in linkage group 6, complete sequence Length = 170278 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 agttttattttgacgcacat 40 |||||||||||||||||||| Sbjct: 77436 agttttattttgacgcacat 77417
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 tggagctccggcggcgatagcgcc 307 ||||||| |||||||||||||||| Sbjct: 106961 tggagctgcggcggcgatagcgcc 106938
>gb|AC122297.4| Mus musculus BAC clone RP23-266D1 from chromosome 6, complete sequence Length = 170005 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ctgagaatcaggattccggg 112 |||||||||||||||||||| Sbjct: 71880 ctgagaatcaggattccggg 71861
>ref|NM_001039302.1| Gallus gallus survival of motor neuron protein interacting protein 1 (SIP1), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 atgaaagtaactattgcagtttta 27 ||||||||||||| |||||||||| Sbjct: 1888 atgaaagtaactactgcagtttta 1911
>emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 in linkage group 6, complete sequence Length = 167946 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 agttttattttgacgcacat 40 |||||||||||||||||||| Sbjct: 116642 agttttattttgacgcacat 116661
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgctggcgacgctacggcgg 251 |||||||||||||||||||| Sbjct: 4028535 cgctggcgacgctacggcgg 4028554
>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete sequence Length = 170936 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 aacttctcccgcgccaggtc 225 |||||||||||||||||||| Sbjct: 114130 aacttctcccgcgccaggtc 114111 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,902,702 Number of Sequences: 3902068 Number of extensions: 2902702 Number of successful extensions: 55268 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55149 Number of HSP's gapped (non-prelim): 119 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)