ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_479737.1| Oryza sativa (japonica cultivar-group), mRNA 113 5e-22
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
3dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
4dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
5dbj|AK073257.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
6dbj|AK072300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
7gb|AC105074.5| Homo sapiens chromosome 18, clone RP11-693M3, com... 42 1.5
8gb|AC015954.9| Homo sapiens chromosome 18, clone RP11-24L5, comp... 42 1.5
9ref|XM_308260.2| Anopheles gambiae str. PEST ENSANGP00000009343 ... 42 1.5
10gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 5.8
11ref|XM_947535.1| Theileria annulata strain Ankara hypothetical p... 40 5.8
12emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on ch... 40 5.8
13emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chro... 40 5.8
14emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chr... 40 5.8
15emb|AJ720463.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.8
16emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in... 40 5.8
17gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, comple... 40 5.8
18gb|AC122297.4| Mus musculus BAC clone RP23-266D1 from chromosome... 40 5.8
19ref|NM_001039302.1| Gallus gallus survival of motor neuron prote... 40 5.8
20emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 i... 40 5.8
21gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.8
22emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chr... 40 5.8

>ref|XM_479737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3088

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Minus

                                                                        
Query: 284  tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
            |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 2819 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 2760

                                                                        
Query: 344  tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
            ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 2759 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 2706

                                        
Query: 404  tacccgaacccgtccctgccccacccgg 431
            || ||||| |||| | ||||||| ||||
Sbjct: 2705 tagccgaagccgtgcttgccccagccgg 2678



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 154  ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
            |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 2937 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 2878

             
Query: 214  c 214
            |
Sbjct: 2877 c 2877



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Plus

                                                                          
Query: 284    tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
              |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 574288 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 574347

                                                                          
Query: 344    tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
              ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 574348 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 574401

                                          
Query: 404    tacccgaacccgtccctgccccacccgg 431
              || ||||| |||| | ||||||| ||||
Sbjct: 574402 tagccgaagccgtgcttgccccagccgg 574429



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 154    ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
              |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 574170 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 574229

               
Query: 214    c 214
              |
Sbjct: 574230 c 574230



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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Plus

                                                                          
Query: 284    tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
              |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 164248 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 164307

                                                                          
Query: 344    tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
              ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 164308 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 164361

                                          
Query: 404    tacccgaacccgtccctgccccacccgg 431
              || ||||| |||| | ||||||| ||||
Sbjct: 164362 tagccgaagccgtgcttgccccagccgg 164389



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 154    ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
              |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 164130 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 164189

               
Query: 214    c 214
              |
Sbjct: 164190 c 164190



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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0498H04
          Length = 151046

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Plus

                                                                        
Query: 284  tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
            |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 1666 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 1725

                                                                        
Query: 344  tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
            ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 1726 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 1779

                                        
Query: 404  tacccgaacccgtccctgccccacccgg 431
            || ||||| |||| | ||||||| ||||
Sbjct: 1780 tagccgaagccgtgcttgccccagccgg 1807



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 154  ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
            |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 1548 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 1607

             
Query: 214  c 214
            |
Sbjct: 1608 c 1608



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>dbj|AK073257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022F02, full
           insert sequence
          Length = 1209

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Minus

                                                                       
Query: 284 tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
           |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 894 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 835

                                                                       
Query: 344 tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
           ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 834 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 781

                                       
Query: 404 tacccgaacccgtccctgccccacccgg 431
           || ||||| |||| | ||||||| ||||
Sbjct: 780 tagccgaagccgtgcttgccccagccgg 753



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 154  ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
            |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 1012 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 953

             
Query: 214  c 214
            |
Sbjct: 952  c 952



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>dbj|AK072300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020B06, full
            insert sequence
          Length = 3088

 Score =  113 bits (57), Expect = 5e-22
 Identities = 125/148 (84%), Gaps = 6/148 (4%)
 Strand = Plus / Minus

                                                                        
Query: 284  tggagctccggcggcgatagcgcccactgcatcgcccagatggagaggggccgcatgtag 343
            |||||| |||||||||| |||||||||||||||||||||| |  ||| || |||||||||
Sbjct: 2819 tggagcaccggcggcgacagcgcccactgcatcgcccagacgccgagcgggcgcatgtag 2760

                                                                        
Query: 344  tgcagcgaccggtacccgccgccggcgtcggacgtccacgcttccggcgtctggaacgcg 403
            ||||||| ||||||      |||| |||||| ||||||||  ||||||||||||||||||
Sbjct: 2759 tgcagcgcccggta------gccgccgtcggccgtccacgactccggcgtctggaacgcg 2706

                                        
Query: 404  tacccgaacccgtccctgccccacccgg 431
            || ||||| |||| | ||||||| ||||
Sbjct: 2705 tagccgaagccgtgcttgccccagccgg 2678



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 154  ccccttgtgctgcacttcctccggcagcttcagcatgctcgccaccttctcgaacttctc 213
            |||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||
Sbjct: 2937 ccccttgtgctgctgctcctcaggcagcctcagcatgctcgctaccttgtcgaacttctc 2878

             
Query: 214  c 214
            |
Sbjct: 2877 c 2877



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>gb|AC105074.5| Homo sapiens chromosome 18, clone RP11-693M3, complete sequence
          Length = 118724

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     aactattgcagttttattttg 32
              |||||||||||||||||||||
Sbjct: 114604 aactattgcagttttattttg 114624



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>gb|AC015954.9| Homo sapiens chromosome 18, clone RP11-24L5, complete sequence
          Length = 180507

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     aactattgcagttttattttg 32
              |||||||||||||||||||||
Sbjct: 137021 aactattgcagttttattttg 137001



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>ref|XM_308260.2| Anopheles gambiae str. PEST ENSANGP00000009343 (ENSANGG00000006992),
            partial mRNA
          Length = 3462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  cccttgtgctgcacttcctcc 175
            |||||||||||||||||||||
Sbjct: 2012 cccttgtgctgcacttcctcc 1992



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>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
              300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 55     agtccgaagaatcttttgtaaagctgga 82
              |||| ||||||| |||||||||||||||
Sbjct: 160934 agtctgaagaattttttgtaaagctgga 160961



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>ref|XM_947535.1| Theileria annulata strain Ankara hypothetical protein (TA14670)
           partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 ccaccttctcgaacttctcc 214
           ||||||||||||||||||||
Sbjct: 772 ccaccttctcgaacttctcc 753



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>emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on chromosome 1 Contains part
             of the TGFBR3 gene fortransforming growth factor, beta
             receptor III (betaglycan, 300kDa), complete sequence
          Length = 34325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 55    agtccgaagaatcttttgtaaagctgga 82
             |||| ||||||| |||||||||||||||
Sbjct: 32716 agtctgaagaattttttgtaaagctgga 32689



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>emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chromosome 1p21.2-22.3
           Contains part of the TGFBR3 gene fortransforming growth
           factor, beta receptor III (betaglycan, 300kDa), complete
           sequence
          Length = 71955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 55  agtccgaagaatcttttgtaaagctgga 82
           |||| ||||||| |||||||||||||||
Sbjct: 391 agtctgaagaattttttgtaaagctgga 364



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>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
              sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    taccccttgtgctgcacttcctcc 175
              ||||||||||| ||||||||||||
Sbjct: 136277 taccccttgtgatgcacttcctcc 136254



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>emb|AJ720463.1| Gallus gallus mRNA for hypothetical protein, clone 18e10
          Length = 3121

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 4    atgaaagtaactattgcagtttta 27
            ||||||||||||| ||||||||||
Sbjct: 1928 atgaaagtaactactgcagtttta 1951



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>emb|BX950174.16| Zebrafish DNA sequence from clone DKEY-219G5 in linkage group 6,
             complete sequence
          Length = 170278

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    agttttattttgacgcacat 40
             ||||||||||||||||||||
Sbjct: 77436 agttttattttgacgcacat 77417



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>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 284    tggagctccggcggcgatagcgcc 307
              ||||||| ||||||||||||||||
Sbjct: 106961 tggagctgcggcggcgatagcgcc 106938



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>gb|AC122297.4| Mus musculus BAC clone RP23-266D1 from chromosome 6, complete sequence
          Length = 170005

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ctgagaatcaggattccggg 112
             ||||||||||||||||||||
Sbjct: 71880 ctgagaatcaggattccggg 71861



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>ref|NM_001039302.1| Gallus gallus survival of motor neuron protein interacting protein 1
            (SIP1), mRNA
          Length = 3081

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 4    atgaaagtaactattgcagtttta 27
            ||||||||||||| ||||||||||
Sbjct: 1888 atgaaagtaactactgcagtttta 1911



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>emb|BX005150.5| Zebrafish DNA sequence from clone CH211-105J21 in linkage group 6,
              complete sequence
          Length = 167946

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     agttttattttgacgcacat 40
              ||||||||||||||||||||
Sbjct: 116642 agttttattttgacgcacat 116661



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     cgctggcgacgctacggcgg 251
               ||||||||||||||||||||
Sbjct: 4028535 cgctggcgacgctacggcgg 4028554



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>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete
              sequence
          Length = 170936

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    aacttctcccgcgccaggtc 225
              ||||||||||||||||||||
Sbjct: 114130 aacttctcccgcgccaggtc 114111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,902,702
Number of Sequences: 3902068
Number of extensions: 2902702
Number of successful extensions: 55268
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55149
Number of HSP's gapped (non-prelim): 119
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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