>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114|
          Length = 122

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 39/56 (69%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
 Frame = +1

Query: 214 LLAVLPL---TPTVDRNRTVSRRSKPNSRTTFIGEQPNPWDLLQPQDVMSRHRGAK 372
           +L   PL    PT DR++TVSRR +P+SRT  IGEQPNPWDLLQPQD MSRHRGAK
Sbjct: 33  VLGTAPLKYPAPTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAK 88



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +3

Query: 129 QLSCPALLLA*QPVHHRLTQPSPLVLGLAPRSSPFNTNGR 248
           +LS  A+LLA QP HH      PLVLG AP   P  T  R
Sbjct: 9   ELSYSAMLLAKQPTHHWFVHSGPLVLGTAPLKYPAPTKDR 48

>NFI_STRCO (Q9X7N2) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)|
           (Deoxyribonuclease V) (DNase V)
          Length = 233

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 8   YEIASHLAVLTPLAYRSSVQKPRTRTCIEKDFPRRSSSSI 127
           + +ASHL VLT L      + P T T  + D PR S+S +
Sbjct: 126 FGLASHLGVLTGLPTIGVAKNPFTFTHDDPDTPRGSTSPL 165

>ZSCA4_HUMAN (Q8NAM6) Zinc finger and SCAN domain-containing protein 4 (Zinc|
           finger protein 494)
          Length = 433

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 255 PNCLTTF*TQLTYHFHRRTTEPLGPSSTPGCDEST 359
           P C T++    TYH H RT E +   S P   E++
Sbjct: 399 PFCKTSYRQSSTYHRHMRTHEKITLPSVPSTPEAS 433

>YCFQ_ECOLI (P75952) Putative HTH-type transcriptional regulator ycfQ|
          Length = 210

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 1   RLVRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFFHTNLAARRCYWHNNRYTI 177
           R V DR+  R A       FC + S E+   + F A    F +      C+  NN  T+
Sbjct: 68  RAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCTTL 126

>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1798

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 92   EKDFPRRSSSSIPT*LPGAAIGITTGTP*VDPTQSSRTRAGSSQ 223
            E  FP R   S+   +P    GIT G P ++       R GS Q
Sbjct: 1544 EDPFPSRDPRSLGPMVPSLLTGITLGPPRMESPSGPHRRLGSPQ 1587

>YABA_LACPL (Q88YP3) Initiation-control protein yabA|
          Length = 115

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 7   VRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFF 123
           + +    + A T+ LSK  S+ + E LY EGF    QF+
Sbjct: 55  IENELPKKAASTTTLSK--SRQNLEKLYDEGFHVCNQFY 91

>ATF1_MOUSE (P81269) Cyclic AMP-dependent transcription factor ATF-1|
           (Activating transcription factor 1) (TCR-ATF1)
          Length = 269

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 256 GSYLPLVLKGELRGASPSTRGLGWVNLWCTGCYANSSAGQLSWYGRTAAPREILL 92
           G Y+ +   G L+ ASPST G+  +        +++  G +  Y +T+  ++IL+
Sbjct: 106 GQYIAIAPNGALQLASPSTDGVQALQTLTMTNSSSTQQGTILQYAQTSDGQQILV 160

>CB017_HUMAN (Q8NC44) Protein C2orf17|
          Length = 543

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +3

Query: 99  ISRGAAVLPYQLSCPALLLA*QPVHHRLTQPSPLVLGLAPRSSPFNTNGR*EPNCLTT 272
           +S G   LP  LS P  L+   P       PSP +L   P+ SP       E   LTT
Sbjct: 438 VSGGLTALPGTLSPPLCLVGSDPA------PSPSILPPVPQDSPQPLPAPEEEEALTT 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,472,683
Number of Sequences: 219361
Number of extensions: 1292625
Number of successful extensions: 3290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3290
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)