ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRN_CAEEL (Q19546) Probable Werner syndrome ATP-dependent helica... 29 2.6
2GYP10_SCHPO (O94661) GTPase-activating protein gyp10 28 5.7
3DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifie... 28 5.7
4YHIT_MYCGE (P47378) Hypothetical HIT-like protein MG132 28 7.5
5ACCN4_MOUSE (Q7TNS7) Amiloride-sensitive cation channel 4 (Amilo... 28 7.5
6RECO_XANAC (Q8PMU8) DNA repair protein recO (Recombination prote... 28 7.5
7GT4_ARATH (Q9M9U0) Putative glycosyltransferase 4 (EC 2.4.-.-) (... 28 7.5
8TAAR4_RAT (Q923Y7) Trace amine-associated receptor 4 (Trace amin... 28 7.5
9TAAR4_MOUSE (Q5QD15) Trace amine-associated receptor 4 27 9.8

>WRN_CAEEL (Q19546) Probable Werner syndrome ATP-dependent helicase homolog 1|
           (EC 3.6.1.-)
          Length = 1056

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 188 EQIFFRLNFLCMRFMFYLVIIACARYLLLLHFRAWSSMPPL*SNMASCLDK 36
           E++   L  +  +    L  + C RY LL HF    + PP  +  A C D+
Sbjct: 569 EEVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYAKPP--TMQADCCDR 617



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>GYP10_SCHPO (O94661) GTPase-activating protein gyp10|
          Length = 373

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 131 LPNKT*ISCTEN*AERISALSLMGHGYLMMIWRHRSASSYQCHISCRNR 277
           L N+  I+   +  E +S +   GHG+LM   R +S     C +SCR+R
Sbjct: 9   LKNEIKIALLNSDVETLSHIGKEGHGFLMKSLR-KSVWVSLCGLSCRHR 56



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>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 193  PDGAWLLDDDLAT*ICFILPVPYFLSEPELLPGYPDRRCHSFTVP 327
            P  AW  D+DL       LPV Y LSE  +L     + C S + P
Sbjct: 1918 PSQAWNADEDLEPPY---LPVHYSLSESAVLDSIKAQPCRSHSAP 1959



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>YHIT_MYCGE (P47378) Hypothetical HIT-like protein MG132|
          Length = 141

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   TTSALVSCKIYPG-MTPYCFKEGAYCSMHENEATINNGHML*LPNKT*ISCTEN*AERIS 184
           TTS+ + C I  G +T Y   E  +     +   + +GH L +P K  +  +    + + 
Sbjct: 5   TTSSCIFCDIVQGSITSYKIGENEHAIAFLDAFPVADGHTLVIPKKHAVDFSSTDQKELQ 64

Query: 185 ALSLM 199
           A+SL+
Sbjct: 65  AVSLL 69



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>ACCN4_MOUSE (Q7TNS7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive|
           cation channel 4) (Acid-sensing ion channel 4)
          Length = 539

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 298 QDTQGEAPVPTRNMALVG*SRSMSPNHHQVAMPH 197
           Q+ + ++P P+R  A  G + S+ PNHH    PH
Sbjct: 497 QELKEQSPCPSRGRAEGGGASSLLPNHHH---PH 527



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>RECO_XANAC (Q8PMU8) DNA repair protein recO (Recombination protein O)|
          Length = 240

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 3   HAP-PQLW*AAKFIQA*RHIASKRGHTAPCTKMKQQ*ITGTCYNYQIKHESHAQKIEP 173
           H P P+L+  A + QA RH+AS         + ++  + G  + + ++H+S  Q I+P
Sbjct: 105 HDPVPELY--ACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP 160



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>GT4_ARATH (Q9M9U0) Putative glycosyltransferase 4 (EC 2.4.-.-) (AtGT4)|
          Length = 513

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 205 WLLDDDLAT*ICFILPVPYFLSEPELLPGYPD 300
           W+  D L T I F +P+P + +   ++ GYPD
Sbjct: 284 WMDSDALFTDILFEIPLPRYENHNLVIHGYPD 315



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>TAAR4_RAT (Q923Y7) Trace amine-associated receptor 4 (Trace amine receptor 2)|
           (TaR-2)
          Length = 347

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 208 AMPHQAKSRYSFGSIFCA*DSCFIW*L*HVPVIYCCFIFV--HGAVC 74
           +M    +S + FG +FC   SC    L    + + CFI V  H AVC
Sbjct: 90  SMVRSIESCWYFGDLFCKVHSCCDIMLCTTSIFHLCFISVDRHYAVC 136



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>TAAR4_MOUSE (Q5QD15) Trace amine-associated receptor 4|
          Length = 347

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 208 AMPHQAKSRYSFGSIFCA*DSCFIW*L*HVPVIYCCFIFV--HGAVC 74
           +M    +S + FG +FC   SC    L    + + CFI V  H AVC
Sbjct: 90  SMIRSIESCWYFGDLFCKVHSCCDIMLCTTSIFHLCFISVDRHYAVC 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,489,744
Number of Sequences: 219361
Number of extensions: 990211
Number of successful extensions: 2101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2101
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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