Clone Name | rbastl05f08 |
---|---|
Clone Library Name | barley_pub |
>WRN_CAEEL (Q19546) Probable Werner syndrome ATP-dependent helicase homolog 1| (EC 3.6.1.-) Length = 1056 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = -2 Query: 188 EQIFFRLNFLCMRFMFYLVIIACARYLLLLHFRAWSSMPPL*SNMASCLDK 36 E++ L + + L + C RY LL HF + PP + A C D+ Sbjct: 569 EEVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYAKPP--TMQADCCDR 617
>GYP10_SCHPO (O94661) GTPase-activating protein gyp10| Length = 373 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 131 LPNKT*ISCTEN*AERISALSLMGHGYLMMIWRHRSASSYQCHISCRNR 277 L N+ I+ + E +S + GHG+LM R +S C +SCR+R Sbjct: 9 LKNEIKIALLNSDVETLSHIGKEGHGFLMKSLR-KSVWVSLCGLSCRHR 56
>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell| adhesion) (Presenilin-binding protein) (PBP protein) Length = 2030 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +1 Query: 193 PDGAWLLDDDLAT*ICFILPVPYFLSEPELLPGYPDRRCHSFTVP 327 P AW D+DL LPV Y LSE +L + C S + P Sbjct: 1918 PSQAWNADEDLEPPY---LPVHYSLSESAVLDSIKAQPCRSHSAP 1959
>YHIT_MYCGE (P47378) Hypothetical HIT-like protein MG132| Length = 141 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 8 TTSALVSCKIYPG-MTPYCFKEGAYCSMHENEATINNGHML*LPNKT*ISCTEN*AERIS 184 TTS+ + C I G +T Y E + + + +GH L +P K + + + + Sbjct: 5 TTSSCIFCDIVQGSITSYKIGENEHAIAFLDAFPVADGHTLVIPKKHAVDFSSTDQKELQ 64 Query: 185 ALSLM 199 A+SL+ Sbjct: 65 AVSLL 69
>ACCN4_MOUSE (Q7TNS7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive| cation channel 4) (Acid-sensing ion channel 4) Length = 539 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 298 QDTQGEAPVPTRNMALVG*SRSMSPNHHQVAMPH 197 Q+ + ++P P+R A G + S+ PNHH PH Sbjct: 497 QELKEQSPCPSRGRAEGGGASSLLPNHHH---PH 527
>RECO_XANAC (Q8PMU8) DNA repair protein recO (Recombination protein O)| Length = 240 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +3 Query: 3 HAP-PQLW*AAKFIQA*RHIASKRGHTAPCTKMKQQ*ITGTCYNYQIKHESHAQKIEP 173 H P P+L+ A + QA RH+AS + ++ + G + + ++H+S Q I+P Sbjct: 105 HDPVPELY--ACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP 160
>GT4_ARATH (Q9M9U0) Putative glycosyltransferase 4 (EC 2.4.-.-) (AtGT4)| Length = 513 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 205 WLLDDDLAT*ICFILPVPYFLSEPELLPGYPD 300 W+ D L T I F +P+P + + ++ GYPD Sbjct: 284 WMDSDALFTDILFEIPLPRYENHNLVIHGYPD 315
>TAAR4_RAT (Q923Y7) Trace amine-associated receptor 4 (Trace amine receptor 2)| (TaR-2) Length = 347 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 208 AMPHQAKSRYSFGSIFCA*DSCFIW*L*HVPVIYCCFIFV--HGAVC 74 +M +S + FG +FC SC L + + CFI V H AVC Sbjct: 90 SMVRSIESCWYFGDLFCKVHSCCDIMLCTTSIFHLCFISVDRHYAVC 136
>TAAR4_MOUSE (Q5QD15) Trace amine-associated receptor 4| Length = 347 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 208 AMPHQAKSRYSFGSIFCA*DSCFIW*L*HVPVIYCCFIFV--HGAVC 74 +M +S + FG +FC SC L + + CFI V H AVC Sbjct: 90 SMIRSIESCWYFGDLFCKVHSCCDIMLCTTSIFHLCFISVDRHYAVC 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,489,744 Number of Sequences: 219361 Number of extensions: 990211 Number of successful extensions: 2101 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2101 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)