ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05f07 |
|---|---|
| Clone Library Name | barley_pub |
>AVPX_ARATH (Q9FWR2) Putative pyrophosphate-energized membrane proton pump 3| (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 3) (H(+)-PPase 3) (AVP1-like protein 2) Length = 802 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/20 (100%), Positives = 20/20 (100%) Frame = -2 Query: 362 IHVLIKMLATITLVMAPIFL 303 IHVLIKMLATITLVMAPIFL Sbjct: 783 IHVLIKMLATITLVMAPIFL 802
>AVP2_ARATH (Q56ZN6) Pyrophosphate-energized membrane proton pump 2 (EC| 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 2) (H(+)-PPase 2) (Vacuolar proton pyrophosphatase 2) (AVP1-like protein 1) Length = 802 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/20 (95%), Positives = 20/20 (100%) Frame = -2 Query: 362 IHVLIKMLATITLVMAPIFL 303 IHVLIKMLATITLVMAP+FL Sbjct: 783 IHVLIKMLATITLVMAPVFL 802
>B4GT4_RAT (Q66HH1) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N-a Length = 344 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H IY+L+ LHPF+Q + YG + Q + FN AK Sbjct: 136 HLIYLLEHLHPFLQRQQLDYGIYVIHQTGSKKFNRAK 172
>B4GT4_MOUSE (Q9JJ04) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N Length = 344 Score = 32.3 bits (72), Expect = 0.29 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H IY+L+ LHPF+Q + YG + Q + FN AK Sbjct: 136 HLIYLLEHLHPFLQRQQLDYGIYIIHQTGSKKFNRAK 172
>B4GT4_HUMAN (O60513) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N Length = 344 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H +Y+L+ LHPF+Q + YG + Q FN AK Sbjct: 136 HLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAK 172
>B4GT4_CRIGR (Q80WN7) Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-)| (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4) [Includes: N Length = 344 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H Y+L+ LHPF+Q + YG + Q + FN AK Sbjct: 136 HLTYLLEHLHPFLQRQQLDYGIYIIHQTGSKKFNRAK 172
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 45 AYKAYEFSSPF*SLSQHIYSPTSASFCPNS 134 +Y+ Y SSP S S YSPTS S+ P S Sbjct: 1713 SYEGYSPSSPKYSPSSPTYSPTSPSYSPTS 1742
>PFA3_NEUCR (Q7S7C5) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty| acyltransferase 3) Length = 622 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 12/68 (17%) Frame = +3 Query: 63 FSSPF*SLSQHIYS-------PTSASFCPNSNGKIRAPSKWAA-----LNLSFQCGKTIL 206 F+SP + +++ YS PT+ SF SNG+ R K A + C + +L Sbjct: 97 FTSPGSTTNEYGYSTLPTQAPPTATSFTVKSNGEFRFCKKCQARKPDRAHHCSTCRRCVL 156 Query: 207 KANHYIPF 230 K +H+ P+ Sbjct: 157 KMDHHCPW 164
>HPPA_THETN (Q8RCX1) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 711 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = -2 Query: 362 IHVLIKMLATITLVMAPIF 306 +HVLIK+++TITLV +F Sbjct: 692 LHVLIKLISTITLVFVALF 710
>GR22E_DROME (P58953) Putative gustatory receptor 22e| Length = 389 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 241 LIYNNHRYFSAGLTASSTDDYKKIGAMTSVIVASIL 348 L+Y HR G +S DY+ + M S ++A++L Sbjct: 233 LLYLYHRLLDLGQRLASIYDYQMVMVMVSFLIANVL 268
>B4GT2_HUMAN (O60909) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)| (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 2) [Includes: L Length = 372 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H Y L LHP ++ ++YG + QH FN AK Sbjct: 157 HLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAK 193
>B4GT2_MOUSE (Q9Z2Y2) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)| (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 2) [Includes: L Length = 369 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H Y L LHP ++ ++YG + QH FN AK Sbjct: 154 HLRYWLHYLHPMLRRQRLRYGVYVINQHGEETFNRAK 190
>B4GT2_CRIGR (Q80WN9) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)| (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 2) [Includes: L Length = 369 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 88 HSIYILQRLHPFVQIATVKYGHHQNGQH*TSPFNVAK 198 H Y L LHP ++ ++YG + QH FN AK Sbjct: 154 HLRYWLHYLHPMLRRQRLRYGIYVINQHGEETFNRAK 190
>ORN_BUCAI (P57637) Oligoribonuclease (EC 3.1.-.-)| Length = 184 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 Query: 159 KWAALNLSFQCGKTILKANHYIPFTLMPHLQ 251 KW + +S CG +I + ++ F MPHL+ Sbjct: 95 KWVPIQVSPMCGNSIAQDRRFL-FQYMPHLE 124
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 54 AYEFSSPF*SLSQHIYSPTSASFCPNS 134 +Y +SPF S + YSPTS S+ P S Sbjct: 769 SYSPTSPFYSPTSPSYSPTSPSYSPTS 795 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,127,143 Number of Sequences: 219361 Number of extensions: 1025253 Number of successful extensions: 2514 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2510 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
