ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y036_HAEIN (Q57335) Hypothetical ABC transporter ATP-binding pro... 31 0.62
2IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2) 30 1.8
3IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS) 30 1.8
4CLPB2_ANASP (Q8YM56) Chaperone clpB 2 28 5.3
5FBLN1_CERAE (Q8MJJ9) Fibulin-1 (Fragment) 28 6.9
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 28 6.9
7PANE1_MOUSE (Q9CQA0) Proliferation-associated nuclear element pr... 28 6.9
8BGAL_SULSH (P50388) Beta-galactosidase (EC 3.2.1.23) (Lactase) 28 6.9
9ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-) 27 9.0
10FA54A_HUMAN (Q6P444) Protein FAM54A (DUF729 domain containing pr... 27 9.0

>Y036_HAEIN (Q57335) Hypothetical ABC transporter ATP-binding protein HI0036|
          Length = 592

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +2

Query: 32  IWNQRNVRVVQNLWFFRVVLLLIMYCWSKEFWLHNPAMICPKRYTTSSPPLYVSTLIYRS 211
           IW  + + +   ++ F + LL+    W K+FW+     + PKR  +  P L+   ++  +
Sbjct: 12  IWILQTLAITSVVFSFGIFLLVRFTQWGKQFWMFAGGYLSPKR--SIKPILFFLLIVAMT 69

Query: 212 IL 217
           +L
Sbjct: 70  LL 71



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>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)|
          Length = 1338

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 113  SSSTLLAAGQPEKTRGFGRP*HSSDSRCSSIL 18
            SSS+LL+A  P  + G G P  SSDSR  S L
Sbjct: 944  SSSSLLSASSPASSLGSGTPGTSSDSRQRSPL 975



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>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 113  SSSTLLAAGQPEKTRGFGRP*HSSDSRCSSIL 18
            SSS+LL+A  P  + G G P  SSDSR  S L
Sbjct: 936  SSSSLLSASSPASSLGSGTPGTSSDSRQRSPL 967



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>CLPB2_ANASP (Q8YM56) Chaperone clpB 2|
          Length = 872

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 399 ILRGEFKDEDSISVDTQVTVPSNGQLP 319
           ILRGEF D D+I VD Q    S  +LP
Sbjct: 840 ILRGEFNDGDTIFVDVQNERLSFSRLP 866



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>FBLN1_CERAE (Q8MJJ9) Fibulin-1 (Fragment)|
          Length = 598

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 400 YPQRRVQ--GRGQHLRRHSGDGAVERTAPPAEAC 305
           Y Q+ V   GRG HL        V   APPAE C
Sbjct: 249 YTQKNVPNCGRGYHLNEEGTRCDVNECAPPAEPC 282



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = -1

Query: 397 PQRRVQGRGQHLRRHSGDGAVERTAPPAEACLPEDERG---------IQAGCCSRREVPA 245
           P+ R +GRG  L   +  G   R+AP A + L  + RG         +  G    RE PA
Sbjct: 739 PRARARGRGPGLLEPTDAGGPPRSAPEAASMLAAELRGKTRSLGRAEVALGAQGPREKPA 798



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>PANE1_MOUSE (Q9CQA0) Proliferation-associated nuclear element protein 1|
          Length = 180

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 399 ILRGEFKDEDSISVDTQVTVPSNGQLPQQKLVFRKMNEESKPAAAQDEKFLPTV*CSIFL 220
           +L+ +   E  + +   + +PSN   P+  L+   +N  SK +  + E+FL  V  S FL
Sbjct: 35  MLKDDCASELRVHLANSLPLPSNVNRPRIDLIVFVINLHSKYSLQKVEEFLQHVDSSFFL 94

Query: 219 QRI 211
            ++
Sbjct: 95  GKV 97



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>BGAL_SULSH (P50388) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 489

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 83  VVLLLIMYCWSKEFWLHNPAMICPKRYTTSSPPLYVST 196
           +  +L MY W    WLH+P  +  +R   S P  ++ST
Sbjct: 142 IYFILNMYHWPLPLWLHDPIRV--RRGDLSGPTGWLST 177



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>ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-)|
          Length = 471

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 251 NFSS*AAAGLDSSFIFRKTSFCWGSCPFDG 340
           NFS  A +    +F FR     WG CP +G
Sbjct: 388 NFSCPAGSTCCCAFGFRNLCLVWGCCPVEG 417



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>FA54A_HUMAN (Q6P444) Protein FAM54A (DUF729 domain containing protein 1)|
          Length = 385

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 250 ELLVLSSSRLGFLVHLPEDKLLLGELSVRRHRHLSVDGD 366
           E+  L +S       L ++++ LG+LS  R  HLSVD D
Sbjct: 161 EMQELKNSTNSSSFGLSDERISLGQLSSSRAAHLSVDPD 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,924,556
Number of Sequences: 219361
Number of extensions: 1130109
Number of successful extensions: 3026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3026
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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