ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05f01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107812.1| Zea mays PCO119122 mRNA sequence Length = 696 Score = 89.7 bits (45), Expect = 6e-15 Identities = 137/167 (82%), Gaps = 3/167 (1%) Strand = Plus / Plus Query: 233 catcagactgtcggcaggaacttctcgtcttgagcagcagccggcttggattcctcgttc 292 |||||||| | ||||| |||||||||| ||| ||||||| ||||| |||| ||| | Sbjct: 368 catcagacagccggcaagaacttctcgcctt---cagcagcgggcttcgattgctcaccc 424 Query: 293 atcttccggaagacaagcttctgctgggggagctgtccgttcgacggcaccgtcacctga 352 | |||||||| || |||||||| || || ||||| ||||| || |||||||| ||||| Sbjct: 425 actttccggaaaactagcttctgttgcggaagctggccgttagagggcaccgtgacctgg 484 Query: 353 gtgtcgacggagatgctgtcctcgtccttgaactcgcctctgaggat 399 ||||| || |||||||||||||||||||||| || ||||||||||| Sbjct: 485 gtgtccacaaagatgctgtcctcgtccttgaaatcacctctgaggat 531
>ref|XM_468773.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3546 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3155 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3096 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3095 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 3036 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 3035 tcgtccttgaaatcacctctcaggata 3009
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 17651152 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 17651093 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 17651092 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 17651033 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 17651032 tcgtccttgaaatcacctctcaggata 17651006
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3925 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3984 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3985 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 4044 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 4045 tcgtccttgaaatcacctctcaggata 4071
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete sequence Length = 136916 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 132855 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 132914 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 132915 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 132974 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 132975 tcgtccttgaaatcacctctcaggata 133001
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 17644693 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 17644634 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 17644633 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 17644574 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 17644573 tcgtccttgaaatcacctctcaggata 17644547
>dbj|AK069123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007C17, full insert sequence Length = 3303 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3155 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3096 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3095 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 3036 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 3035 tcgtccttgaaatcacctctcaggata 3009
>dbj|AK060637.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D01, full insert sequence Length = 2290 Score = 61.9 bits (31), Expect = 1e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 254 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 313 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 2109 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 2050 Query: 314 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 373 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 2049 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 1990 Query: 374 tcgtccttgaactcgcctctgaggata 400 ||||||||||| || ||||| |||||| Sbjct: 1989 tcgtccttgaaatcacctctcaggata 1963
>emb|BX015981.1|CNS08KHT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA24AA05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 567 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 146 atatgcccaaagagatacactaccagttcg 175 ||||||||||||| |||||| ||||||||| Sbjct: 219 atatgcccaaagacatacacgaccagttcg 190
>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence Length = 171069 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gacaaacaaccttagtatgct 26 ||||||||||||||||||||| Sbjct: 102842 gacaaacaaccttagtatgct 102862
>ref|XM_747822.1| Aspergillus fumigatus Af293 C6 transcription factor UaY (Afu1g15470) partial mRNA Length = 3267 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gacaagcttctgctggggga 323 |||||||||||||||||||| Sbjct: 2437 gacaagcttctgctggggga 2418
>ref|XM_947841.1| Theileria annulata strain Ankara DEAD-box family helicase (TA07525) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ctatgatatgcccaaagagataca 164 |||||||||||||||||| ||||| Sbjct: 2046 ctatgatatgcccaaagacataca 2069
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcaccgtcacctgagtgtcg 358 |||||||||||||||||||| Sbjct: 5414972 gcaccgtcacctgagtgtcg 5414953
>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence Length = 163339 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tggagcaaagaattctggct 129 |||||||||||||||||||| Sbjct: 98840 tggagcaaagaattctggct 98859
>emb|CR759840.6| Zebrafish DNA sequence from clone DKEY-239O7 in linkage group 25, complete sequence Length = 110071 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gggttgtcctgctgctaataatgt 104 ||||||| |||||||||||||||| Sbjct: 56225 gggttgttctgctgctaataatgt 56248
>emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in linkage group 25, complete sequence Length = 191745 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gggttgtcctgctgctaataatgt 104 ||||||| |||||||||||||||| Sbjct: 80560 gggttgttctgctgctaataatgt 80583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,088,604 Number of Sequences: 3902068 Number of extensions: 3088604 Number of successful extensions: 53534 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53466 Number of HSP's gapped (non-prelim): 68 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
