ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (S... 29 3.8
2SEMG2_HUMAN (Q02383) Semenogelin-2 precursor (Semenogelin II) (S... 28 6.6
3POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.... 28 6.6
4SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SG... 28 8.6

>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387
           L+QD++ GRK HK+++   ST+E
Sbjct: 273 LNQDQEHGRKAHKVSYQSSSTEE 295



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>SEMG2_HUMAN (Q02383) Semenogelin-2 precursor (Semenogelin II) (SGII)|
          Length = 582

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387
           LSQD++ GRK HK+++    T+E
Sbjct: 273 LSQDQEHGRKAHKISYPSSRTEE 295



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>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           2) (dPOMT2)
          Length = 765

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 195 YRAYEISSRFIYFLNASFLAVPRTI*IINATAYILQHQIVCTFSRQARRTKGSQTKLQ*S 374
           YR Y + +  I++ N  FLA+  T+ + NA       Q    F+R A + +      +  
Sbjct: 564 YRIYLLGNPLIWWSNLVFLALFVTVFLCNAVV----QQRRAGFARSAAQNQAQVPDSETV 619

Query: 375 FHEGDSEHST 404
             + +SEHST
Sbjct: 620 AQDEESEHST 629



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>SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SGI) [Contains:|
           Alpha-inhibin-92; Alpha-inhibin-31; Seminal basic
           protein]
          Length = 462

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387
           L+QD+Q GRK +K+++   ST+E
Sbjct: 273 LNQDQQHGRKANKISYQSSSTEE 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,742,912
Number of Sequences: 219361
Number of extensions: 1196297
Number of successful extensions: 2336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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