Clone Name | rbastl05e12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (S... | 29 | 3.8 | 2 | SEMG2_HUMAN (Q02383) Semenogelin-2 precursor (Semenogelin II) (S... | 28 | 6.6 | 3 | POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.... | 28 | 6.6 | 4 | SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SG... | 28 | 8.6 |
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>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = +1 Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387 L+QD++ GRK HK+++ ST+E Sbjct: 273 LNQDQEHGRKAHKVSYQSSSTEE 295
>SEMG2_HUMAN (Q02383) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 28.5 bits (62), Expect = 6.6 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387 LSQD++ GRK HK+++ T+E Sbjct: 273 LSQDQEHGRKAHKISYPSSRTEE 295
>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)| (Dolichyl-phosphate-mannose--protein mannosyltransferase 2) (dPOMT2) Length = 765 Score = 28.5 bits (62), Expect = 6.6 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +3 Query: 195 YRAYEISSRFIYFLNASFLAVPRTI*IINATAYILQHQIVCTFSRQARRTKGSQTKLQ*S 374 YR Y + + I++ N FLA+ T+ + NA Q F+R A + + + Sbjct: 564 YRIYLLGNPLIWWSNLVFLALFVTVFLCNAVV----QQRRAGFARSAAQNQAQVPDSETV 619 Query: 375 FHEGDSEHST 404 + +SEHST Sbjct: 620 AQDEESEHST 629
>SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SGI) [Contains:| Alpha-inhibin-92; Alpha-inhibin-31; Seminal basic protein] Length = 462 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = +1 Query: 319 LSQDRQDGRKDHKLNFSDHSTKE 387 L+QD+Q GRK +K+++ ST+E Sbjct: 273 LNQDQQHGRKANKISYQSSSTEE 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,742,912 Number of Sequences: 219361 Number of extensions: 1196297 Number of successful extensions: 2336 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2314 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2336 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)