ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1 29 2.4
2MTS1_STRSA (P29347) Modification methylase StsI (EC 2.1.1.72) (A... 29 2.4
3SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG... 29 3.2
4SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG... 29 3.2
5PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3 28 4.1
6PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2 28 5.4
7SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG... 28 5.4
8PDR4_ORYSA (Q8GU89) Pleiotropic drug resistance protein 4 28 7.1
9C4AA1_DROME (Q9V7G5) Probable cytochrome P450 4aa1 (EC 1.14.-.-)... 28 7.1
10SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8 27 9.2
11FSHB_MASCO (Q6SI68) Follitropin beta chain precursor (Follicle-s... 27 9.2
12MPIP1_CAEEL (O44552) M-phase inducer phosphatase cdc-25.1 (EC 3.... 27 9.2

>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1|
          Length = 1468

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 297  NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 205
            N F  F  S    P+WW W C  C   +T++
Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403



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>MTS1_STRSA (P29347) Modification methylase StsI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase StsI) (M.StsI)
          Length = 653

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 43  KYMFL*TRCQAFPKNINSVLQV*HGGEKQSIHLQNSANVPFGTRDDELNRLFGY 204
           KY  L      FPKNIN+ + +  GG    I+++    + F   +  +N +F Y
Sbjct: 373 KYKLLNQILPLFPKNINTFVDIFSGGANVGINVKAKKYI-FNDMNTRINEMFRY 425



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>SHBG_PHOSU (Q62588) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 399

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 132 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMP 248
           NS A FC    W +G R++    + R  N W + C   P
Sbjct: 353 NSSASFCLSDLWVQGQRLDIDQALNRSQNIWTHSCPHSP 391



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>SHBG_MOUSE (P97497) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 403

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 132 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 278
           +S A FC   FW +G R++    + R  + W + C   P+   N+ +TS
Sbjct: 357 SSSASFCLSDFWVQGQRLDIDQALSRSQDIWTHSCPQRPS---NDTRTS 402



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>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3|
          Length = 1457

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 258  PIWWAWNCTCCSSDFTVF 205
            PIWW W C  C   +T++
Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392



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>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2|
          Length = 1464

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 258  PIWWAWNCTCCSSDFTVF 205
            PIWW W C  C   +T++
Sbjct: 1382 PIWWRWYCWICPVAWTLY 1399



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>SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 398

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 132 NSLAKFCKCSFWNEG*RVESTLRI*RQ*NHWNNMCNSMPTIWGNNLQTS 278
           +S A FC    W +G +++    + R  + W + C S P   GN   TS
Sbjct: 352 DSSASFCLDGLWAQGQKLDMDKALNRSQDIWTHSCPSSP---GNGTDTS 397



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>PDR4_ORYSA (Q8GU89) Pleiotropic drug resistance protein 4|
          Length = 1450

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 258  PIWWAWNCTCCSSDFTVF 205
            P+WW W C  C   +T++
Sbjct: 1367 PVWWRWYCWICPVAWTLY 1384



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>C4AA1_DROME (Q9V7G5) Probable cytochrome P450 4aa1 (EC 1.14.-.-) (CYPIVAA1)|
          Length = 514

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 362 LLPAVRTL-RKLGLSSEEENKLIIHFTISASL*IVAPYGGHGIAHVVP 222
           L P+V  + RKLG    EE +L  H   + S   + PY  H +AH+ P
Sbjct: 378 LYPSVPLIARKLG----EEVRLAKHTLPAGSNVFICPYATHRLAHIYP 421



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>SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8|
          Length = 1427

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 229  LFQ*FYCLYIRRVDSTRHPSFQKEHLQNFASELI 128
            +FQ F C  I+++     P+   E L+NF  ++I
Sbjct: 1088 VFQAFTCFCIKKIMENNEPAMAMEDLKNFIFQII 1121



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>FSHB_MASCO (Q6SI68) Follitropin beta chain precursor (Follicle-stimulating|
           hormone beta subunit) (FSH-beta) (FSH-B)
          Length = 130

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = -3

Query: 273 SVDCCPIWWAWNCTCCSS----DFTVFISEESIQLVI 175
           S+  C + W W   CC S    + T+ I +E  +  I
Sbjct: 4   SIQLCILLWCWRAICCHSCELTNITISIEKEECRFCI 40



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>MPIP1_CAEEL (O44552) M-phase inducer phosphatase cdc-25.1 (EC 3.1.3.48) (Cell|
           division cycle-related protein 25.1)
          Length = 604

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 LQNSANVPFGTRDDELNRLFGYKDSKITGTTC-AIPCPPYGATIYRLA 279
           L N  + PFG  DDE+      ++S++  T+  A P P    +++ LA
Sbjct: 178 LNNPRDDPFGDEDDEVFEQSNVRNSQVQNTSIFAQPAPRTATSLWDLA 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,593,877
Number of Sequences: 219361
Number of extensions: 1116003
Number of successful extensions: 2436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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