>YHP1_YEAST (Q04116) Homeobox protein YHP1|
          Length = 353

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +3

Query: 63  PSNSTGQLPIPFLDTHTHKTHITSCAFRPPCNRPNSKVRRRGKNEGALAQLTHGESPANR 242
           PS+  G + +P L    H        ++ PC+    K +     +    ++T   +P ++
Sbjct: 34  PSDDQGDIRLPPLAASAHIVRPVVNIYKSPCDEERPKRKSPQAVDFLSQRVTTSMTPLSK 93

Query: 243 PNSL--HAPALPERKINSK 293
           P  L  H+P  P  ++ SK
Sbjct: 94  PKKLSSHSPFTPTVRVCSK 112

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 58  NTPPTQLDSSPSLFL--THTHTKHTSPPA 138
           N  PT++ S P + L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119

>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratricopeptide|
            repeat protein (Ubiquitously transcribed TPR protein on
            the X chromosome) (Fragment)
          Length = 1333

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
 Frame = +3

Query: 21   SLN*KHSSQISIQHPSNSTGQLPIP---FLDTHTHKTHIT---SCAFRPPCNRPNSKVRR 182
            SLN  HS   +I        Q PI     L +H     I    S +  P         R 
Sbjct: 775  SLNSPHSGLHTINGEGMEESQSPIKTDLLLVSHRPSPQIIPSMSVSIYPSSAEVLKACRN 834

Query: 183  RGKNEGALAQLTHGESPANRPNSLHAPALPERKINSKTGGNLLQLLR----PPVSE 338
             GKN  + + +   + P  RP S   P LP+ K+N  T    L+  R    PP+ +
Sbjct: 835  LGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQ 890

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
 Frame = +1

Query: 34  SIQVRLASNTPPTQLDSSPSLFLT--------HTHTKHTSPPAHFAHLATVQT 168
           S   RLA N PP Q   SPSL  T        H+    TS P H A     QT
Sbjct: 623 SAPTRLAHNDPPQQY--SPSLATTSSSSHNPGHSSASRTSSPLHAAPRGAPQT 673

>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 152 RWAKCAGGDVCFVC 111
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33

>SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein 6|
           (Polycystic kidney disease protein 1) (SamCystin)
          Length = 871

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 230 RFPVSKLRKGALVFAPPTNFRVWTVARWAKCAGG 129
           R P  KL+     F PP++F +W+  R   C  G
Sbjct: 540 RLPSDKLKAVIPPFLPPSSFELWSSDRSRTCPNG 573

>CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97)|
          Length = 835

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 28  IKSIQVRLASNTPPTQLDSSPSLFLTHTHTKHTSPPAHFA--HLATVQTLKFVGGAKTRA 201
           I+ +Q+R        +L +  S+FL+H +TK  + P  FA  HL +       G A    
Sbjct: 434 IRGVQLR--------RLSAVNSIFLSHNNTKELNSPILFAFSHLESSD-----GEAGRDP 480

Query: 202 PLRNLLTGNRQQ 237
           P ++++ G RQ+
Sbjct: 481 PAKDVMPGPRQE 492

>Y1807_RHIME (Q92PF5) UPF0283 membrane protein R01807|
          Length = 359

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 238 FAGDSP*VSCARAPSFLPRRRTLEFGRLQGG 146
           F G +  V     P  +PRRR L FG++  G
Sbjct: 52  FIGTTAAVESLNLPEAMPRRRRLSFGKIAAG 82

>YKC2_CAEEL (P41993) Hypothetical protein B0280.2|
          Length = 627

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +1

Query: 34  SIQVRLASNTP--PTQLDSSPSLFLTHTHTKHTSPPAHFAHLATVQTLKFVGGAKTRAPL 207
           S++VR + +TP  PT  DS  S     T  K T PP H +++     L  +    T    
Sbjct: 306 SVRVRGSLSTPRIPTHRDSYRSATKPDTVPKQTPPPTHNSYV-----LPHIDERMT---- 356

Query: 208 RNLLTGNRQQTVRTRYMPQPCRREK*IAKPGVIYCS 315
           R ++     Q +R   +P        ++ P   +CS
Sbjct: 357 RKMILMKNHQNLREEVLPFELEVGNYVSFPNHTHCS 392

>YIF6_YEAST (P40522) Hypothetical 71.4 kDa protein in SNP1-GPP1 intergenic|
           region
          Length = 640

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 129 TSCAFRPPCNRPNSKVRRRGKNEGALAQLTHGESPANRPNSL 254
           +SCA  PP + PN +V+R      +   L +  + +NR   L
Sbjct: 391 SSCASEPPSSSPNKRVKRSPPVVSSDVMLNNNNTLSNRATLL 432

>STAR9_HUMAN (Q9P2P6) StAR-related lipid transfer protein 9 (StARD9) (START|
            domain-containing protein 9) (Fragment)
          Length = 1820

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
 Frame = +3

Query: 51   SIQHPSNSTGQLPIPFLDTHTHKTHITSCAFRPPCNRPNSKVRRRGKNEGALAQLTHGES 230
            S Q P  S G L +    TH  + H    +   P + P + +    +    L     G S
Sbjct: 1027 STQEPGLSPGSLTLSAPSTHPVEGHQKLDSSPDPVDAPRTPMDNYSQTTDELGGSQRGRS 1086

Query: 231  PANRPN-----SLHAPALPER--KINSKTGGNLLQLLRP 326
               R N      LH+P  P++  K+     G   Q L+P
Sbjct: 1087 SLQRSNGRSFLELHSPHSPQQSPKLQFSFLGQHPQQLQP 1125

>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)|
           (Transcriptional coactivator Sp110) (Interferon-induced
           protein 41/75)
          Length = 689

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
 Frame = +3

Query: 12  NEPSLN*KHSSQISIQHPSNSTGQLPIPFLDTHTHKTHITSCAFRPPCNRPNSKVRR--- 182
           +EP  + + S++I  + PS S   LP+P L      T +T+       N           
Sbjct: 157 SEPGTSSQQSTEILSESPSPSDPVLPLPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSL 216

Query: 183 -----RGKNEGALAQLTHGESPANRPNSLHAP--ALPERKINS 290
                +  ++  + Q+   E P   P   H+P  ++PE + NS
Sbjct: 217 LTSTVQVASDNLIPQIRDKEDPQEMP---HSPLGSMPEIRDNS 256

>ALN_BACSU (O32137) Allantoinase (EC 3.5.2.5)|
          Length = 446

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  SLFLTHTHTKHTSPPAHFAHLATVQTLKFVGGAK 192
           +++ T  + K T  P HF H++T + ++ +  AK
Sbjct: 220 AVYRTIQYAKVTGCPVHFVHISTAKAVRLIREAK 253

>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP coiled-coil|
           transcription activator 2)
          Length = 935

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 66  SNSTGQLPIPFLDTHTHKTHITSCAFRP 149
           S+ + Q P+PFL T   +  ++SC F P
Sbjct: 557 SSCSDQKPLPFLATTIKQEDVSSCPFAP 584

>MCD4_YEAST (P36051) GPI-anchor biosynthetic protein MCD4|
          Length = 919

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 48  ISIQHPSNSTGQLPIPFLD 104
           I + +P NS G+LPI ++D
Sbjct: 340 IGVNYPKNSVGELPIAYID 358

>CRTI_STRGR (P54981) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 507

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 37  IQVRLASNTP--PTQLDSSPSLFLTHTHTKHTSPPAHFAHLATVQTLKFVGGAKTRAPLR 210
           +  RL   TP  P  L  SPS  + HT T  T P    AH     T+ F  GA  +    
Sbjct: 286 VSYRLLGRTPHRPLPLRHSPSAVILHTGTDRTWP--DLAH----HTISF--GAAWKNTFH 337

Query: 211 NLLTGNRQQTVRTRYMPQPCRREK*IAKPG 300
            L    R  +  +  + +P   +  +A PG
Sbjct: 338 ELTRTGRLMSDPSLLITRPTATDPSLAPPG 367

>SVL3_YEAST (Q03088) Styryl dye vacuolar localization protein 3|
          Length = 825

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 3   SKQNEPSLN*KHSSQISIQHPSNSTGQLPIPFLDTHTHKTHITSCAFRPPCNRPNSKVRR 182
           S+Q++  LN  H++     +P+N+  Q+P P L+ H       S +        N+KV  
Sbjct: 676 SQQSKNKLNMPHAT-----NPNNTFNQVPAPSLNNHVPTQRQFSSSTMIEVTNNNNKVNN 730

Query: 183 RGKN 194
              N
Sbjct: 731 SSSN 734

>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 230 RFPVSKLRKGALVFAPPTNFRVWTVARWAKCAGG 129
           R P  KL+     F PP++F +W+  R   C  G
Sbjct: 539 RLPSDKLKAVIPPFLPPSSFELWSSDRSHTCHNG 572


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,057,193
Number of Sequences: 219361
Number of extensions: 1141897
Number of successful extensions: 2996
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)