ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05e07 |
|---|---|
| Clone Library Name | barley_pub |
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/19 (94%), Positives = 18/19 (94%) Frame = -3 Query: 380 EEEIGPASPQENLYLQHNF 324 EEEI PASPQENLYLQHNF Sbjct: 883 EEEIAPASPQENLYLQHNF 901
>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 262 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 310 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 155 + E+++ V R + R+ + LLW +L TYW DF ++ L R IRS Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252
>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 935 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 9 NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 134 N D+N+ R+T+ K T LH Y G ++ GH+ K Sbjct: 31 NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72
>SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -2 Query: 381 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 256 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -2 Query: 381 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 256 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -1 Query: 190 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 74 HL+ LCR +S +CH Y VE +L SP+L + D K Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199
>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41| Length = 615 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +3 Query: 24 NIMLICRETNNRKTTTHLHVSASYRTGLINCGHST 128 N ++C NN++ TT H+S + L+ H T Sbjct: 231 NSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHET 265
>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +3 Query: 81 VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 239 + +SY TG +N +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 240 NGQSNRSQSLNLKRQTVSMFSA 305 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +3 Query: 81 VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 239 + +SY TG +N +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 240 NGQSNRSQSLNLKRQTVSMFSA 305 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)| (Exo-1,3-beta-glucanase) Length = 429 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/35 (28%), Positives = 18/35 (51%) Frame = +3 Query: 12 TVDENIMLICRETNNRKTTTHLHVSASYRTGLINC 116 T+DE+I ++C + T H +V + L +C Sbjct: 290 TIDEHISVVCEQGKETLTEAHWNVVGEWSAALTDC 324
>GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5)| Length = 382 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +1 Query: 70 HTYTYLRATEQD-SSTVAIPLINTSGNYRTTESIYKEMPPD 189 H YT+ A S + P+I ++GNY T E I K PD Sbjct: 98 HVYTHEAAGLAILSQAMVTPVIPSNGNYLTLEDIKKHYIPD 138
>BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase| (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) Length = 423 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +2 Query: 62 DNYTLTRICELQNRTHQLWPFHL*IQV-----AIIGRPNQSTKKCLQMLKILPVRTLYS* 226 D +T +C+ +N H LW L Q+ + G Q+ + L+ +++L T+ + Sbjct: 147 DTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLRSMELLIDETVSAI 206 Query: 227 ILSP 238 I+ P Sbjct: 207 IIEP 210
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 343 CTCSTTSDEMPRSAENME 290 C+CS +DE+PR EN E Sbjct: 67 CSCSVNADEVPRWPENRE 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,753,897 Number of Sequences: 219361 Number of extensions: 1109929 Number of successful extensions: 2839 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2797 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2839 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
