ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 109 7e-21
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 94 4e-16
7gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 78 2e-11
8gb|AY109245.1| Zea mays PCO147899 mRNA sequence 76 1e-10
9gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
10gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
12dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
13dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
14dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
15dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
17gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomi... 44 0.35
18emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 44 0.35
19gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 1.4
20gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 1.4
21gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 42 1.4
22gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 1.4
23gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 1.4
24gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 1.4
25gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, co... 42 1.4
26gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 5.4
27gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's ... 40 5.4
28gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
29gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
30gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 5.4
31ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM033... 40 5.4
32emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 5.4
33gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating... 40 5.4
34ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.4
35emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 5.4
36emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 5.4
37gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, compl... 40 5.4
38gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 5.4
39ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 5.4
40gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 5.4
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
42gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 5.4
43gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, comple... 40 5.4
44gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 5.4
45emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 5.4
46emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, co... 40 5.4
47dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.4
48dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 5.4
49emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8... 40 5.4
50dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 5.4 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  109 bits (55), Expect = 7e-21
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
            ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgc-gattccct 3053

                           
Query: 392  gggtcttgctcctta 406
            |||||||||||||||
Sbjct: 3052 gggtcttgctcctta 3038
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 7e-21
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                            
Query: 332      ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
                ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgc-gattccct 10020895

                               
Query: 392      gggtcttgctcctta 406
                |||||||||||||||
Sbjct: 10020896 gggtcttgctcctta 10020910
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  109 bits (55), Expect = 7e-21
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                          
Query: 332    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
              ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgc-gattccct 101177

                             
Query: 392    gggtcttgctcctta 406
              |||||||||||||||
Sbjct: 101178 gggtcttgctcctta 101192
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  109 bits (55), Expect = 7e-21
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                         
Query: 332   ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
             ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgc-gattccct 48452

                            
Query: 392   gggtcttgctcctta 406
             |||||||||||||||
Sbjct: 48453 gggtcttgctcctta 48467
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  109 bits (55), Expect = 7e-21
 Identities = 71/75 (94%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                          
Query: 332    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
              ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| |
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgc-gattccct 115388

                             
Query: 392    gggtcttgctcctta 406
              |||||||||||||||
Sbjct: 115389 gggtcttgctcctta 115403
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>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 69/75 (92%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                       
Query: 332 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
           ||||||||| |||||||||||||| ||||||||||| || ||||||||||| |||||| |
Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgc-aattccct 573

                          
Query: 392 gggtcttgctcctta 406
           |||||||||||||||
Sbjct: 572 gggtcttgctcctta 558
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>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 67/75 (89%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                       
Query: 332 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattcctt 391
           ||||||||| || ||||||||||| || |||||||| || ||||||||||| |||||| |
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgc-aattccct 580

                          
Query: 392 gggtcttgctcctta 406
           |||||||||||||||
Sbjct: 579 gggtcttgctcctta 565
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>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 337 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggtc 396
           ||||||||||||| || ||||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgc-aattccttgggtc 653

                     
Query: 397 ttgctcctta 406
           ||||| ||||
Sbjct: 652 ttgcttctta 643
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                         
Query: 336   ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
             |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 16608

                     
Query: 396   cttgctcc 403
             ||| ||||
Sbjct: 16609 cttactcc 16616
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                          
Query: 336    ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
              |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 166073

                      
Query: 396    cttgctcc 403
              ||| ||||
Sbjct: 166074 cttactcc 166081
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                           
Query: 336     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
               |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 3648936

                       
Query: 396     cttgctcc 403
               ||| ||||
Sbjct: 3648937 cttactcc 3648944
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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
            |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 2910

                    
Query: 396  cttgctcc 403
            ||| ||||
Sbjct: 2909 cttactcc 2902
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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
            |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 2910

                    
Query: 396  cttgctcc 403
            ||| ||||
Sbjct: 2909 cttactcc 2902
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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
            |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 2941

                    
Query: 396  cttgctcc 403
            ||| ||||
Sbjct: 2940 cttactcc 2933
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>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
            |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 1319

                    
Query: 396  cttgctcc 403
            ||| ||||
Sbjct: 1318 cttactcc 1311
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                           
Query: 336     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaaattccttgggt 395
               |||||||||||||| |||||||| |||||||| || |||||||| ||  |||||||||||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggc-gattccttgggt 3657630

                       
Query: 396     cttgctcc 403
               ||| ||||
Sbjct: 3657631 cttactcc 3657638
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>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete
             sequence
          Length = 91755

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 297   ctacatgacacaattgcaacagattg 322
             |||||||| |||||||||||||||||
Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
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>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
              the SNAP91 gene for synaptosomal-associated protein, 91 kD
              homolog (mouse) (KIAA0656) and a CpG island, complete
              sequence
          Length = 167018

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 223    aatcttttgtacattataaaaa 244
              ||||||||||||||||||||||
Sbjct: 106168 aatcttttgtacattataaaaa 106189
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>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   gttttttgtcaaaaaaggcct 106
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
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>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   tcttctcatccctctctttaa 224
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043
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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 27   cgaaatacagtatctcaatcc 47
            |||||||||||||||||||||
Sbjct: 5828 cgaaatacagtatctcaatcc 5808
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>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   tcttcctcttctcatccctct 218
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794
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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   cctcttctcatccctctcttt 222
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706
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>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 198  tcttcctcttctcatccctct 218
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016
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>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence
          Length = 204424

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 301   atgacacaattgcaacagatt 321
             |||||||||||||||||||||
Sbjct: 73824 atgacacaattgcaacagatt 73844
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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 atggaagggagttgggagag 130
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 209019

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  gtgcaaattccttgggtctt 398
            ||||||||||||||||||||
Sbjct: 4718 gtgcaaattccttgggtctt 4737
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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    atcttttgtacattataaaa 243
              ||||||||||||||||||||
Sbjct: 157323 atcttttgtacattataaaa 157304
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   atcttttgtacattataaaa 243
             ||||||||||||||||||||
Sbjct: 28118 atcttttgtacattataaaa 28099
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tcttcctcttctcatccctc 217
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565
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>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  gtaatcttgtctcccaagct 376
            ||||||||||||||||||||
Sbjct: 2918 gtaatcttgtctcccaagct 2899
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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete
              sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    gtacattataaaaacatctt 250
              ||||||||||||||||||||
Sbjct: 118337 gtacattataaaaacatctt 118318
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>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA
            clone MGC:52826 IMAGE:4884583), complete cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  ttttgtacattataaaaaca 246
            ||||||||||||||||||||
Sbjct: 3216 ttttgtacattataaaaaca 3235
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>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0)
           partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 223 aatcttttgtacattataaaaaca 246
           |||||||||||||||| |||||||
Sbjct: 324 aatcttttgtacattagaaaaaca 347
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  tgtctcccaagctgagtgca 383
            ||||||||||||||||||||
Sbjct: 6689 tgtctcccaagctgagtgca 6670
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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  atggaagggagttgggagag 130
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343
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>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tcacatctattcttacacca 83
              ||||||||||||||||||||
Sbjct: 114772 tcacatctattcttacacca 114791
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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   cccttctgcttgagggtaat 361
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 atggaagggagttgggagag 130
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 atggaagggagttgggagag 130
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      atcttttgtacattataaaa 243
                ||||||||||||||||||||
Sbjct: 17897369 atcttttgtacattataaaa 17897350
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>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    tcttcctcttctcatccctc 217
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950
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>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence
          Length = 110512

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    acaaacttcacatctattct 76
             ||||||||||||||||||||
Sbjct: 22462 acaaacttcacatctattct 22481
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ctcccttctgcttgagggta 359
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
            sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  aatcttttgtacattataaa 242
            ||||||||||||||||||||
Sbjct: 6181 aatcttttgtacattataaa 6162
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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gtacattataaaaacatctt 250
             ||||||||||||||||||||
Sbjct: 72225 gtacattataaaaacatctt 72206
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>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    cccttctgcttgagggtaat 361
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   tgtctcccaagctgagtgca 383
             ||||||||||||||||||||
Sbjct: 44905 tgtctcccaagctgagtgca 44886
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>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    tttgtacattataaaaacatcttt 251
              ||||||||||||||||||| ||||
Sbjct: 106494 tttgtacattataaaaacaacttt 106517
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>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 cccttctgcttgagggtaat 361
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,943,960
Number of Sequences: 3902068
Number of extensions: 3943960
Number of successful extensions: 77699
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77499
Number of HSP's gapped (non-prelim): 184
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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