ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3 29 2.7
2TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 3.5
3MDR_LEITA (P21441) Multidrug resistance protein (EC 3.6.3.44) (P... 28 4.6
4HRMA_PSESY (Q08370) Protein hrmA 28 4.6
5CATF_MOUSE (Q9R013) Cathepsin F precursor (EC 3.4.22.41) 28 6.0
6NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate... 28 7.8
7HCYG_OCTDO (O61363) Hemocyanin G-type, units Oda to Odg 28 7.8

>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 121  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 29
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349



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>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 9   ISQNNLKFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 122
           + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 34  LKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69



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>MDR_LEITA (P21441) Multidrug resistance protein (EC 3.6.3.44)|
           (P-glycoprotein)
          Length = 1548

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 144 PMLLFLFSSYTICNNVLWFWSI-LSVTIYRVNIV 46
           P+LL  F  Y   +N  W W + L++TI+  N++
Sbjct: 249 PVLLEYFVKYLNADNATWGWGLGLALTIFLTNVI 282



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>HRMA_PSESY (Q08370) Protein hrmA|
          Length = 375

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 140 IGGDTKTSHLTEEEKKKALFIPRLQQELGRR 232
           IGG ++ + + +   +KA  +PRL + LGRR
Sbjct: 69  IGGQSQRAQIAQVLNEKAAAVPRLDRMLGRR 99



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>CATF_MOUSE (Q9R013) Cathepsin F precursor (EC 3.4.22.41)|
          Length = 462

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 146 GDTKTSHLTEEEKKKALFIPRLQQELGRRRRKTK 247
           G TK S LTEEE       P LQ+E GR+    K
Sbjct: 210 GITKFSDLTEEEFHTIYLNPLLQKESGRKMSPAK 243



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>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 171 VKWDVFVSPPMLLFLFSSYTI 109
           ++W VF  PPM ++L +SY I
Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261



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>HCYG_OCTDO (O61363) Hemocyanin G-type, units Oda to Odg|
          Length = 2896

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 41   TPTMLTRYIVTDRILQNHSTLLQIV*ELKRNNNIGGDTKTSHLTEEEKKKALFIPRLQQE 220
            +P  LT  I  D + + HS    +  + K+N +   D          +   L IP+L +E
Sbjct: 1080 SPFSLTSDINIDPMTREHSVPFDVF-DYKKNFHYEYDLL--------ELNGLSIPQLHRE 1130

Query: 221  LGRRRRKTKIHGFFL 265
            + RRR K++I   F+
Sbjct: 1131 ISRRRAKSRIFATFM 1145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,504,909
Number of Sequences: 219361
Number of extensions: 887143
Number of successful extensions: 2745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2744
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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