ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ310841.1|HVU310841 Hordeum vulgare partial CA2 gene for P-... 196 4e-47
2gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 46 0.091
3gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence 46 0.091
4ref|XM_950997.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PR... 44 0.36
5ref|XM_330885.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PR... 44 0.36
6emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BA... 44 0.36
7gb|L26036.1|NEUCON6X Neurospora crassa conidiation protein (con-... 44 0.36
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
9emb|BX830450.1|CNS0A25Z Arabidopsis thaliana Full-length cDNA Co... 42 1.4
10dbj|AK066259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
12emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.4
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
14gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 40 5.6
15gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.6
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
17dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.6
18gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan trans... 40 5.6
19emb|AL391261.3|CNS06C85 Human chromosome 14 DNA sequence BAC C-2... 40 5.6

>emb|AJ310841.1|HVU310841 Hordeum vulgare partial CA2 gene for P-type ATPase
          Length = 1686

 Score =  196 bits (99), Expect = 4e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1686 tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 1627

                                                   
Query: 380  aaggagcacgctggcgagccactggagactggtgagagg 418
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1626 aaggagcacgctggcgagccactggagactggtgagagg 1588



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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 330   ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 389
             ||||| ||||| ||||||||| |  |||| || ||||||||  | || || |||||||||
Sbjct: 11293 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 11234

                            
Query: 390   ctggcgagccactgg 404
             ||||| |||||||||
Sbjct: 11233 ctggccagccactgg 11219



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>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence
          Length = 103167

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 330   ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 389
             ||||| ||||| ||||||||| |  |||| || ||||||||  | || || |||||||||
Sbjct: 90549 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 90490

                            
Query: 390   ctggcgagccactgg 404
             ||||| |||||||||
Sbjct: 90489 ctggccagccactgg 90475



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>ref|XM_950997.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1)
           partial mRNA
          Length = 282

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 369 ccgacgaggccaaggagcacgc 390
           ||||||||||||||||||||||
Sbjct: 233 ccgacgaggccaaggagcacgc 254



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>ref|XM_330885.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1)
           partial mRNA
          Length = 282

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 369 ccgacgaggccaaggagcacgc 390
           ||||||||||||||||||||||
Sbjct: 233 ccgacgaggccaaggagcacgc 254



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>emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BAC clone B2G14
          Length = 53957

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 369   ccgacgaggccaaggagcacgc 390
             ||||||||||||||||||||||
Sbjct: 33700 ccgacgaggccaaggagcacgc 33679



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>gb|L26036.1|NEUCON6X Neurospora crassa conidiation protein (con-6) gene exons 1-2,
            complete cds
          Length = 1824

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 369  ccgacgaggccaaggagcacgc 390
            ||||||||||||||||||||||
Sbjct: 1516 ccgacgaggccaaggagcacgc 1537



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 363      ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415
                |||||||| | |||||||||||| || ||||| | |||||| || ||||||||
Sbjct: 24524242 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 24524190



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>emb|BX830450.1|CNS0A25Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB82ZD12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1733

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  gctcttctcaggcttgctctc 220
            |||||||||||||||||||||
Sbjct: 1402 gctcttctcaggcttgctctc 1422



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>dbj|AK066259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H11, full
            insert sequence
          Length = 3668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 363  ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415
            |||||||| | |||||||||||| || ||||| | |||||| || ||||||||
Sbjct: 3299 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 3247



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 363      ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415
                |||||||| | |||||||||||| || ||||| | |||||| || ||||||||
Sbjct: 24452448 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 24452396



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>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 363   ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415
             |||||||| | |||||||||||| || ||||| | |||||| || ||||||||
Sbjct: 95273 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 95221



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 342      agcttgacgacgacggcgat 361
                ||||||||||||||||||||
Sbjct: 22889643 agcttgacgacgacggcgat 22889662



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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
             sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   agcttgacgacgacggcgat 361
             ||||||||||||||||||||
Sbjct: 92173 agcttgacgacgacggcgat 92192



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gacgacgacggcgatcggca 366
             ||||||||||||||||||||
Sbjct: 27793 gacgacgacggcgatcggca 27774



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 342      agcttgacgacgacggcgat 361
                ||||||||||||||||||||
Sbjct: 22882671 agcttgacgacgacggcgat 22882690



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>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2
          Length = 83478

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    gatccgcaaaatatacatcttttc 57
             ||||||||||||||| ||||||||
Sbjct: 36461 gatccgcaaaatataaatcttttc 36438



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>gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan transferase (XTR3) gene, complete
            cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 34   gatccgcaaaatatacatcttttc 57
            ||||||||||||||| ||||||||
Sbjct: 1982 gatccgcaaaatataaatcttttc 2005



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>emb|AL391261.3|CNS06C85 Human chromosome 14 DNA sequence BAC C-2014B16 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 162144

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   tgcccttttcatcaggagga 328
             ||||||||||||||||||||
Sbjct: 69463 tgcccttttcatcaggagga 69444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,361,231
Number of Sequences: 3902068
Number of extensions: 3361231
Number of successful extensions: 62488
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62327
Number of HSP's gapped (non-prelim): 161
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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