Clone Name | rbastl05e02 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ310841.1|HVU310841 Hordeum vulgare partial CA2 gene for P-type ATPase Length = 1686 Score = 196 bits (99), Expect = 4e-47 Identities = 99/99 (100%) Strand = Plus / Minus Query: 320 tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 tcaggaggacccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggcc 1627 Query: 380 aaggagcacgctggcgagccactggagactggtgagagg 418 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 aaggagcacgctggcgagccactggagactggtgagagg 1588
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 46.1 bits (23), Expect = 0.091 Identities = 62/75 (82%) Strand = Plus / Minus Query: 330 ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 389 ||||| ||||| ||||||||| | |||| || |||||||| | || || ||||||||| Sbjct: 11293 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 11234 Query: 390 ctggcgagccactgg 404 ||||| ||||||||| Sbjct: 11233 ctggccagccactgg 11219
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 46.1 bits (23), Expect = 0.091 Identities = 62/75 (82%) Strand = Plus / Minus Query: 330 ccaacaggaatgagcttgacgacgacggcgatcggcatcccgacgaggccaaggagcacg 389 ||||| ||||| ||||||||| | |||| || |||||||| | || || ||||||||| Sbjct: 90549 ccaactggaatcagcttgacggcagcggcaatgggcatcccagccagaccgaggagcacg 90490 Query: 390 ctggcgagccactgg 404 ||||| ||||||||| Sbjct: 90489 ctggccagccactgg 90475
>ref|XM_950997.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1) partial mRNA Length = 282 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 369 ccgacgaggccaaggagcacgc 390 |||||||||||||||||||||| Sbjct: 233 ccgacgaggccaaggagcacgc 254
>ref|XM_330885.1| Neurospora crassa OR74A CONIDIATION-SPECIFIC PROTEIN 6 (NCU08769.1) partial mRNA Length = 282 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 369 ccgacgaggccaaggagcacgc 390 |||||||||||||||||||||| Sbjct: 233 ccgacgaggccaaggagcacgc 254
>emb|BX284753.1|NCB2G14 Neurospora crassa DNA linkage group II BAC clone B2G14 Length = 53957 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 369 ccgacgaggccaaggagcacgc 390 |||||||||||||||||||||| Sbjct: 33700 ccgacgaggccaaggagcacgc 33679
>gb|L26036.1|NEUCON6X Neurospora crassa conidiation protein (con-6) gene exons 1-2, complete cds Length = 1824 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 369 ccgacgaggccaaggagcacgc 390 |||||||||||||||||||||| Sbjct: 1516 ccgacgaggccaaggagcacgc 1537
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 363 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| Sbjct: 24524242 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 24524190
>emb|BX830450.1|CNS0A25Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB82ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1733 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 gctcttctcaggcttgctctc 220 ||||||||||||||||||||| Sbjct: 1402 gctcttctcaggcttgctctc 1422
>dbj|AK066259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H11, full insert sequence Length = 3668 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 363 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| Sbjct: 3299 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 3247
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 363 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| Sbjct: 24452448 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 24452396
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 363 ggcatcccgacgaggccaaggagcacgctggcgagccactggagactggtgag 415 |||||||| | |||||||||||| || ||||| | |||||| || |||||||| Sbjct: 95273 ggcatcccaatgaggccaaggagaacactggcaatccactgcagcctggtgag 95221
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 agcttgacgacgacggcgat 361 |||||||||||||||||||| Sbjct: 22889643 agcttgacgacgacggcgat 22889662
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 agcttgacgacgacggcgat 361 |||||||||||||||||||| Sbjct: 92173 agcttgacgacgacggcgat 92192
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gacgacgacggcgatcggca 366 |||||||||||||||||||| Sbjct: 27793 gacgacgacggcgatcggca 27774
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 agcttgacgacgacggcgat 361 |||||||||||||||||||| Sbjct: 22882671 agcttgacgacgacggcgat 22882690
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2 Length = 83478 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gatccgcaaaatatacatcttttc 57 ||||||||||||||| |||||||| Sbjct: 36461 gatccgcaaaatataaatcttttc 36438
>gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan transferase (XTR3) gene, complete cds Length = 2703 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 gatccgcaaaatatacatcttttc 57 ||||||||||||||| |||||||| Sbjct: 1982 gatccgcaaaatataaatcttttc 2005
>emb|AL391261.3|CNS06C85 Human chromosome 14 DNA sequence BAC C-2014B16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tgcccttttcatcaggagga 328 |||||||||||||||||||| Sbjct: 69463 tgcccttttcatcaggagga 69444 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,361,231 Number of Sequences: 3902068 Number of extensions: 3361231 Number of successful extensions: 62488 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62327 Number of HSP's gapped (non-prelim): 161 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)