>OPSD_CATBO (Q17296) Rhodopsin|
          Length = 378

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 409 WVAGPHICKIFGQTG---GCGNPFT 344
           WV GP +C+++G TG   GCG+ +T
Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144

>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.9) (Valine--tRNA ligase) (ValRS)
          Length = 1093

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 387 AKYLGRREAAATPSPLCSSATKKKKEIQPASQQVSESVP 271
           AK+  ++ AA    P   SA K+KKE  PA     +S P
Sbjct: 84  AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122

>Y1791_AQUAE (O67660) Hypothetical protein aq_1791|
          Length = 127

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 407 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 300
           GS+ S M+N+  DGR ++   LC   P R R+++ +
Sbjct: 16  GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 369  REAAATPSPLCSSATKKKKEIQPASQQVSESVP 271
            REAA  P    S++T++    Q A+QQ SES P
Sbjct: 3359 REAANAPEEQASTSTEQTPAQQEATQQPSESTP 3391

>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
           gene B protein)
          Length = 2715

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 240 IAGWLDNETTLELTH*LAGWLAVFLSSSSWP-----NCTEVKGLPQPPVCPNILHI*GPA 404
           +A   D ET  E+TH L  W ++    S+W      +  +VK      V P I H+  PA
Sbjct: 383 VAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPA 442

Query: 405 T 407
           +
Sbjct: 443 S 443

>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 TDSLTCWLAGCISFFFFVAELH 340
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 TDSLTCWLAGCISFFFFVAELH 340
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 TDSLTCWLAGCISFFFFVAELH 340
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 TDSLTCWLAGCISFFFFVAELH 340
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 275 TDSLTCWLAGCISFFFFVAELH 340
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>HSLO_BACSU (P37565) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)|
          Length = 291

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 315 KEIQPASQQVSESVPVLFHCPASQQFF 235
           +E+     ++ E++PV FHCP S++ F
Sbjct: 216 EEVLGEKPEILETMPVRFHCPCSKERF 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,703,666
Number of Sequences: 219361
Number of extensions: 1298353
Number of successful extensions: 3809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3806
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)