Clone Name | rbastl05e01 |
---|---|
Clone Library Name | barley_pub |
>OPSD_CATBO (Q17296) Rhodopsin| Length = 378 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -1 Query: 409 WVAGPHICKIFGQTG---GCGNPFT 344 WV GP +C+++G TG GCG+ +T Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 387 AKYLGRREAAATPSPLCSSATKKKKEIQPASQQVSESVP 271 AK+ ++ AA P SA K+KKE PA +S P Sbjct: 84 AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122
>Y1791_AQUAE (O67660) Hypothetical protein aq_1791| Length = 127 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 407 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 300 GS+ S M+N+ DGR ++ LC P R R+++ + Sbjct: 16 GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -2 Query: 369 REAAATPSPLCSSATKKKKEIQPASQQVSESVP 271 REAA P S++T++ Q A+QQ SES P Sbjct: 3359 REAANAPEEQASTSTEQTPAQQEATQQPSESTP 3391
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)| (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced gene B protein) Length = 2715 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Frame = +3 Query: 240 IAGWLDNETTLELTH*LAGWLAVFLSSSSWP-----NCTEVKGLPQPPVCPNILHI*GPA 404 +A D ET E+TH L W ++ S+W + +VK V P I H+ PA Sbjct: 383 VAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPA 442 Query: 405 T 407 + Sbjct: 443 S 443
>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 275 TDSLTCWLAGCISFFFFVAELH 340 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 275 TDSLTCWLAGCISFFFFVAELH 340 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 275 TDSLTCWLAGCISFFFFVAELH 340 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 275 TDSLTCWLAGCISFFFFVAELH 340 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 275 TDSLTCWLAGCISFFFFVAELH 340 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>HSLO_BACSU (P37565) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 291 Score = 28.5 bits (62), Expect = 8.4 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -2 Query: 315 KEIQPASQQVSESVPVLFHCPASQQFF 235 +E+ ++ E++PV FHCP S++ F Sbjct: 216 EEVLGEKPEILETMPVRFHCPCSKERF 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,703,666 Number of Sequences: 219361 Number of extensions: 1298353 Number of successful extensions: 3809 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3806 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)