>MSH6_SCHPO (O74502) DNA mismatch repair protein msh6|
          Length = 1254

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 144 QRKPTSVFLPSSN-TTRPVTPTTPAKAQIVN--SLSWHRQLPWDRMAHDHDSNQELAGGA 314
           Q K  S    SSN  +   TP     +  VN  S S  R+LP    +  H +N E+   +
Sbjct: 37  QEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELP---TSPSHHANTEIDSSS 93

Query: 315 SWVPPDCGVPLRKMLQKTIHRNA 383
           S +PP    P    L  ++HR++
Sbjct: 94  SMLPPPSSDPFSSPLSSSLHRSS 116

>GLNE_PASMU (Q9CNQ2) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 986

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 5   HINLKPQILRSSVYRNYISYYVLGKYKNM 91
           H+N   Q+LR  VYR YI + VL   ++M
Sbjct: 289 HVNTLQQLLRPFVYRRYIDFSVLQALRDM 317

>METE_CAUCR (Q9AAW1) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 777

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 288 SNQELAGGASWVPPDCGVPLRK 353
           + Q LAG   WV PDCG+  RK
Sbjct: 735 ARQRLAGEQLWVNPDCGLKTRK 756

>MIM1_CHICK (P08940) Myeloid protein 1 precursor (p33)|
          Length = 326

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 251 PMPAEGVHDLGFSRCCRSNWSGGVRGGEKYGCGF 150
           P P +  H   ++  C  N +  +RG +KYGCG+
Sbjct: 174 PFPQQDAH---WAVVCAGNPTNEIRGCDKYGCGY 204

>SHC3_HUMAN (Q92529) SHC transforming protein 3 (SH2 domain protein C3) (Src|
           homology 2 domain-containing transforming protein C3)
           (Neuronal Shc) (N-Shc) (Protein Rai)
          Length = 594

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 148 GNPHPYFS--PPRTPPDQLLLQHRLKPRS*TP 237
           G+ HPY++  P + PP    L  RLKPR   P
Sbjct: 336 GSDHPYYNSIPSKMPPPGGFLDTRLKPRPHAP 367

>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 171 PSSNTT-RPVTPTTPAKAQIVNSLSWHRQLPWDRMAH 278
           PS N T +P TPT+P++A    S   H  LP    +H
Sbjct: 221 PSHNPTFQPTTPTSPSEAPATTSYIAHHLLPTPSPSH 257

>ETF2_MSEPV (Q9YW29) Early transcription factor 82 kDa subunit (VETF large|
           subunit)
          Length = 760

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
 Frame = +2

Query: 11  NLKPQILRS----SVYRNYISYYVLGKYKN--ML*SSEVDTVEGNLRNPDTAETHIRISP 172
           N+  Q+ RS    SVYR+YIS  +   YKN   + SS +D +E ++ N D  +  +RIS 
Sbjct: 146 NIGSQLARSNVYSSVYRDYISEIINNIYKNRYAMKSSIIDAMEYSI-NIDFQDL-LRISN 203

Query: 173 LLEHHQT 193
           + ++++T
Sbjct: 204 IPDYNKT 210

>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2|
          Length = 544

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 121 RELEKSRYSGNPHPYFSPPRTPPDQLLLQHRLKPRS*TPSAGIGS 255
           + L++ +YS NP     P R P D  ++ H    +S +P AG  S
Sbjct: 19  QNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSHSPDAGYES 63

>TGFB1_CHICK (P09531) Transforming growth factor beta-1 precursor (TGF-beta-1)|
           [Contains: Latency-associated peptide (LAP)] (Fragment)
          Length = 373

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -1

Query: 266 VPWKLPM--PAEGVHDLGFSRCCR---SNWSGGVRGGEKYGCGFPLYLDFSSSLPQCRLQ 102
           VP+ L M  PAE  ++L  +R  R   +++  G    EK  C  PLY+DF   L    + 
Sbjct: 236 VPYVLAMALPAERANELHSARRRRDLDTDYCFGPGTDEKNCCVRPLYIDFRKDLQWKWIH 295

Query: 101 KIRAYFCTF 75
           + + Y   F
Sbjct: 296 EPKGYMANF 304

>AAP2_NEUCR (O59942) Amino acid permease 2|
          Length = 541

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 349 RKGTPQSGGTHEAPPANSWFES*SCAIRSHGSCRCQLREFTIW 221
           R+GTP SG    + P+ S  ES   A+ + G      REF+ W
Sbjct: 21  RQGTPSSGEAAASTPSTSSTESGDKALEALGYTPVFKREFSRW 63

>Y273_CHLMU (Q9PL35) Hypothetical protein TC0273|
          Length = 367

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 174 SSNTTRPVTPTTPAKAQIVNSLSWHRQLPWDRMAHDHDSNQE 299
           SS++T   T T  AK ++V S    R     R   DH  NQE
Sbjct: 302 SSSSTSSKTSTPKAKRRVVRSSRSERNARHHRNKEDHRQNQE 343

>B4GT6_RAT (O88419) Beta-1,4-galactosyltransferase 6 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 6) (Beta4Gal-T6) (b4Gal-T6)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 6) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 6) [Includes: Lac
          Length = 382

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 156 TSVFLPSSNTTRPVTPTTPAKAQIVNSLSWH-RQLPWDRMAHDHDSNQELAGGASWVPPD 332
           T+ +LP + T  P  P       +   LS +  ++ +D +      + E+  G  W P D
Sbjct: 92  TTTYLPQNFTYSPHLPCPEKLPYMRGFLSVNVSEISFDEVHQLFSKDSEIEPGGHWRPQD 151

Query: 333 CGVPLRKMLQKTIHRNAHE 389
           C  P  K+      RN HE
Sbjct: 152 C-KPRWKVAVLIPFRNRHE 169

>B4GT6_MOUSE (Q9WVK5) Beta-1,4-galactosyltransferase 6 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 6) (Beta4Gal-T6) (b4Gal-T6)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 6) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 6) [Includes: L
          Length = 382

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 156 TSVFLPSSNTTRPVTPTTPAKAQIVNSLSWH-RQLPWDRMAHDHDSNQELAGGASWVPPD 332
           T+ +LP + T  P  P       +   LS +  ++ +D +      + E+  G  W P D
Sbjct: 92  TTTYLPQNFTYLPHLPCPEKLPYMRGFLSVNVSEISFDEVHQLFSKDSEIGPGGHWRPKD 151

Query: 333 CGVPLRKMLQKTIHRNAHE 389
           C  P  K+      RN HE
Sbjct: 152 C-KPRWKVAVLIPFRNRHE 169

>KAR1_YEAST (P11927) Cell division control protein KAR1|
          Length = 433

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 125 NLRNPDTAETHIRISPLLEHHQTS 196
           N RNP + E+HI++ P++ +  +S
Sbjct: 170 NTRNPKSKESHIKVKPIINNKSSS 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,583,947
Number of Sequences: 219361
Number of extensions: 1478126
Number of successful extensions: 4500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4498
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)