Clone Name | rbastl05d07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_707028.1| Candida albicans SC5314 hypothetical protein (CaO19.13985), mRNA Length = 3432 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 ccatcatcaaaattgaatgaatc 62 ||||||||||||||||||||||| Sbjct: 1600 ccatcatcaaaattgaatgaatc 1622
>ref|XM_883874.1| Candida albicans SC5314 hypothetical protein (CaJ7.0411) partial mRNA Length = 3432 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 ccatcatcaaaattgaatgaatc 62 ||||||||||||||||||||||| Sbjct: 1600 ccatcatcaaaattgaatgaatc 1622
>ref|XM_707053.1| Candida albicans SC5314 hypothetical protein (CaO19.6693) partial mRNA Length = 3432 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 ccatcatcaaaattgaatgaatc 62 ||||||||||||||||||||||| Sbjct: 1600 ccatcatcaaaattgaatgaatc 1622
>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence Length = 203300 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 73 acatcatctctacaatacaaaaa 95 ||||||||||||||||||||||| Sbjct: 79319 acatcatctctacaatacaaaaa 79297
>dbj|AP001462.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-869B15, complete sequence Length = 106886 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 73 acatcatctctacaatacaaaaa 95 ||||||||||||||||||||||| Sbjct: 11985 acatcatctctacaatacaaaaa 11963
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ccatcatcaaaattgaatgaatc 62 ||||||||||||||||||||||| Sbjct: 804792 ccatcatcaaaattgaatgaatc 804770
>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete sequence Length = 185010 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 catcatctctacaatacaaaaa 95 |||||||||||||||||||||| Sbjct: 76774 catcatctctacaatacaaaaa 76795
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 accacgacgaagaagcttgaag 374 |||||||||||||||||||||| Sbjct: 3603911 accacgacgaagaagcttgaag 3603890
>gb|AC102297.12| Mus musculus chromosome 1, clone RP24-392K18, complete sequence Length = 167248 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aataatttatagtatacaaca 333 ||||||||||||||||||||| Sbjct: 26311 aataatttatagtatacaaca 26291
>gb|AC145123.2| Homo sapiens chromosome 8, clone XXfos-82949F4, complete sequence Length = 37635 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 328 acaacacttcctaggtaatttttatacca 356 ||||||||||||| |||||||||||||| Sbjct: 14636 acaacacttcctatataatttttatacca 14664
>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence Length = 107641 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 tgaaaatcaccagaatttgca 275 ||||||||||||||||||||| Sbjct: 34996 tgaaaatcaccagaatttgca 34976
>gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, complete sequence Length = 100079 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 328 acaacacttcctaggtaatttttatacca 356 ||||||||||||| |||||||||||||| Sbjct: 87644 acaacacttcctatataatttttatacca 87616
>gb|AC023908.6|AC023908 Homo sapiens chromosome 15 clone RP11-37C7 map 15q14, complete sequence Length = 169670 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 aagaagcttgaagatcaccca 382 ||||||||||||||||||||| Sbjct: 26840 aagaagcttgaagatcaccca 26860
>gb|AC037198.7|AC037198 Homo sapiens chromosome 15 clone CTD-2033D15 map 15q14, complete sequence Length = 185695 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 aagaagcttgaagatcaccca 382 ||||||||||||||||||||| Sbjct: 177889 aagaagcttgaagatcaccca 177909
>emb|AL672051.14| Mouse DNA sequence from clone RP23-332O3 on chromosome X, complete sequence Length = 163949 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 atgggatttcttatgcatgta 30 ||||||||||||||||||||| Sbjct: 139092 atgggatttcttatgcatgta 139112
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acatacatcatctctacaat 88 |||||||||||||||||||| Sbjct: 613862 acatacatcatctctacaat 613881
>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence Length = 117818 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acatacatcatctctacaat 88 |||||||||||||||||||| Sbjct: 36224 acatacatcatctctacaat 36243
>gb|AY509253.1| Ostreid herpesvirus 1, complete genome Length = 207439 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 catctctacaatacaaaaac 96 |||||||||||||||||||| Sbjct: 206409 catctctacaatacaaaaac 206390 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 catctctacaatacaaaaac 96 |||||||||||||||||||| Sbjct: 185552 catctctacaatacaaaaac 185571
>emb|AL645469.18| Mouse DNA sequence from clone RP23-340E18 on chromosome 11 Contains the Mylc2a gene for myosin light chain, regulatory A, the Gck gene for glucokinase, a novel gene, the gene for prenylated SNARE protein (Ykt6), the Camk2d gene for calcium/calmodulin-dependent protein kinase II delta and two CpG islands, complete sequence Length = 172356 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ctccagtatctggtgatctggcaa 314 ||||||| |||||||||||||||| Sbjct: 127456 ctccagtttctggtgatctggcaa 127479
>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11, complete sequence Length = 133334 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tatagtatacaacacttcct 339 |||||||||||||||||||| Sbjct: 55319 tatagtatacaacacttcct 55300
>gb|AC021148.8| Homo sapiens BAC clone RP11-472B18 from 4, complete sequence Length = 124102 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aaataaatgctagtgtacaa 205 |||||||||||||||||||| Sbjct: 87729 aaataaatgctagtgtacaa 87748
>gb|AC013718.6| Homo sapiens BAC clone RP11-116I17 from 2, complete sequence Length = 177855 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcatctctacaatacaaaaa 95 |||||||||||||||||||| Sbjct: 71264 tcatctctacaatacaaaaa 71283
>emb|AJ272152.1|HSA272152 Homo sapiens partial ugd gene for UDPglucose dehydrogenase, exon 2 Length = 876 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 aaataaatgctagtgtacaa 205 |||||||||||||||||||| Sbjct: 116 aaataaatgctagtgtacaa 97
>emb|AJ272274.1|HSA272274 Homo sapiens partial ugd gene for UDP-glucose dehydrogenase, exon 2 Length = 876 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 aaataaatgctagtgtacaa 205 |||||||||||||||||||| Sbjct: 116 aaataaatgctagtgtacaa 97 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,850,493 Number of Sequences: 3902068 Number of extensions: 4850493 Number of successful extensions: 117555 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117473 Number of HSP's gapped (non-prelim): 82 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)