>PDIA6_ARATH (O22263) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 361

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = -2

Query: 407 YPTVLLFPAENKSAISYEGGISVGNLIEFLELHASNSRH---MLEYKEGVQNKNDKGFK- 240
           +PT+  FP +NK+   Y+GG  + + + F+   +  SR     L  K G+    D   K 
Sbjct: 216 FPTLKFFPKDNKAGHDYDGGRDLDDFVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKE 275

Query: 239 ---IDQDQAKGR*RRTQGNKSTQEWS 171
                +D+ K    R +   ST + S
Sbjct: 276 LVAASEDEKKAVLSRIEEEASTLKGS 301

>PDI2_CAEEL (Q17770) Protein disulfide-isomerase 2 precursor (EC 5.3.4.1) (PDI|
           1) (Prolyl 4-hydroxylase beta subunit)
          Length = 493

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -2

Query: 419 KEEFYPTVLLFPAENKSAISYEGGISVGNLIEFLELHASNSRHMLEYKEGVQNKNDKG 246
           K + +PT+  FPA +   + Y G  ++    +FLE +        E ++  +  +++G
Sbjct: 432 KIQSFPTIKFFPAGSNKVVDYTGDRTIEGFTKFLETNGKEGAGASEEEKAEEEADEEG 489

>PDI_YEAST (P17967) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)|
           (Thioredoxin-related glycoprotein 1)
          Length = 522

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 413 EFYPTVLLFPAENKS-AISYEGGISVGNLIEFLE 315
           E YPT++L+P   KS ++ Y+G  S+ +L +F++
Sbjct: 448 EGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIK 481

>REXO4_NEUCR (Q7S9B7) RNA exonuclease 4 (EC 3.1.-.-)|
          Length = 406

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 14/45 (31%)
 Frame = +1

Query: 313 NSKNSIKLPTEIPPSY--------------DIALLFSAGKSNTVG 405
           ++KN + LPT++P S               D+AL+  A KSNT+G
Sbjct: 170 SNKNGLPLPTDLPSSLTLSNGLTLDTSTTTDLALILQATKSNTLG 214

>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)|
          Length = 1058

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 184  HKNGQILTVFYSPISKYNV*ERGEHKQTKPTRKEYWTFFLTLKGDLTWLSYMKMLDL 14
            H NG  +     P    +V + GEH QTK   K +   F   K    WL   KM+ L
Sbjct: 958  HHNGVTI-----PAPPLDVLKIGEHMQTKSDEKLFLVLFFDNKRSWQWLPKSKMVPL 1009

>PDI1_SCHPO (Q10057) Putative protein disulfide-isomerase C1F5.02 precursor (EC|
           5.3.4.1)
          Length = 492

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 407 YPTVLLFPAENK-SAISYEGGISVGNLIEFLELHAS 303
           +PT++ F A +K + + YEG  ++ +L  F++ HAS
Sbjct: 427 FPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHAS 462

>ERP38_NEUCR (Q92249) Protein disulfide-isomerase erp38 precursor (EC 5.3.4.1)|
           (ERp38)
          Length = 369

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 407 YPTVLLFPAENKSAISYEGGISVGNLIEFLELHASNSR 294
           +PT+  FP  + +   Y GG S  +L++FL   A   R
Sbjct: 217 FPTIKFFPKGSTTPEDYNGGRSEADLVKFLNEKAGTHR 254

>PDIA6_MEDSA (P38661) Probable protein disulfide-isomerase A6 precursor (EC|
           5.3.4.1) (P5)
          Length = 364

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 407 YPTVLLFPAENKSAISYEGGISVGNLIEFLELHASNSR 294
           +PT+  FP  NK+   Y GG  + + + F+   +  SR
Sbjct: 222 FPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSR 259

>L_SENDZ (P06447) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2228

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 305 SNSRHMLEYKEGVQNKNDKGFKIDQDQAKGR*RRTQGNKSTQEWSNIDCFL 153
           +NS+   +  EG++NKN  G+  ++ +++   + T  + ST  +  + CFL
Sbjct: 612 NNSKSSEKRNEGMENKNSGGYWDEKKRSRHEFKAT--DSSTDGYETLSCFL 660

>ERP60_SCHMA (P38658) Probable protein disulfide-isomerase ER-60 precursor (EC|
           5.3.4.1) (ERP60)
          Length = 484

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 407 YPTVLLFPAENKSA-ISYEGGISVGNLIEFLELHAS 303
           +PT+   P   KS+ +SYEGG    ++I++L   A+
Sbjct: 432 FPTIYFVPKGKKSSPVSYEGGRDTNDIIKYLAREAT 467

>TIGA_ASPNG (Q00216) Protein disulfide-isomerase tigA precursor (EC 5.3.4.1)|
          Length = 359

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 407 YPTVLLFPAENKSAISYEGGISVGNLIEFL 318
           YPT+  FP  +  ++ YEG  S    I+FL
Sbjct: 216 YPTIKFFPKGSTESVPYEGARSEQAFIDFL 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,487,690
Number of Sequences: 219361
Number of extensions: 1117265
Number of successful extensions: 2818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2817
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)