ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence 182 5e-43
2gb|AY105873.1| Zea mays PCO094136 mRNA sequence 182 5e-43
3ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 117 3e-23
4dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
6dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
7dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
8gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9,... 42 1.2
9gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosom... 42 1.2
10gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... 42 1.2
11gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome... 42 1.2
12emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chr... 42 1.2
13ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-co... 40 4.9
14gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, com... 40 4.9
15gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, comp... 40 4.9
16emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chr... 40 4.9
17emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 ... 40 4.9
18emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in... 40 4.9
19gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, comp... 40 4.9
20ref|XM_684436.1| PREDICTED: Danio rerio similar to apoptosis-ind... 40 4.9
21ref|XM_680044.1| PREDICTED: Danio rerio similar to apoptosis-ind... 40 4.9
22gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 4.9
23gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-18... 40 4.9
24gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... 40 4.9
25gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 4.9
26emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 ... 40 4.9
27emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in... 40 4.9
28gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.9
29emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chr... 40 4.9 
>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score =  182 bits (92), Expect = 5e-43
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                        
Query: 156  ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 215
            |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 1389 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 1330

                                                                        
Query: 216  gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 275
            | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 1329 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 1270

                                                                        
Query: 276  ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 335
             || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 1269 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 1210

                                        
Query: 336  tgtgatgccgctcttcagttttatattt 363
            | ||||| ||||| ||||||||||||||
Sbjct: 1209 tttgatgacgctcctcagttttatattt 1182
to top
>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score =  182 bits (92), Expect = 5e-43
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                       
Query: 156 ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 215
           |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 575 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 516

                                                                       
Query: 216 gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 275
           | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 515 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 456

                                                                       
Query: 276 ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 335
            || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 455 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 396

                                       
Query: 336 tgtgatgccgctcttcagttttatattt 363
           | ||||| ||||| ||||||||||||||
Sbjct: 395 tttgatgacgctcctcagttttatattt 368
to top
>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                        
Query: 209  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 268
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465

                                                                        
Query: 269  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 328
            || || | || ||  || |||||||| ||||||||||| || || |||||||| || | |
Sbjct: 3464 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 3405

                                                   
Query: 329  tcctgtttgtgatgccgctcttcagttttatatttaaga 367
            |||||||||||||| |||||||| |||||||||||||||
Sbjct: 3404 tcctgtttgtgatgtcgctcttcggttttatatttaaga 3366
to top
>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                        
Query: 209  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 268
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124

                                                                        
Query: 269  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 328
            || || | || ||  || |||||||| ||||||||||| || || |||||||| || | |
Sbjct: 1123 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 1064

                                                   
Query: 329  tcctgtttgtgatgccgctcttcagttttatatttaaga 367
            |||||||||||||| |||||||| |||||||||||||||
Sbjct: 1063 tcctgtttgtgatgtcgctcttcggttttatatttaaga 1025
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 330      cctgtttgtgatgccgctcttcagttttatatttaaga 367
                ||||||||||||| |||||||| |||||||||||||||
Sbjct: 11024477 cctgtttgtgatgtcgctcttcggttttatatttaaga 11024514



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 209      gaacttagggaagtcattcctacagcgctctggtacaagtc 249
                |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                            
Query: 254      aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 313
                ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168

                        
Query: 314      ggggctgg 321
                ||||||||
Sbjct: 11024169 ggggctgg 11024176
to top
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 330   cctgtttgtgatgccgctcttcagttttatatttaaga 367
             ||||||||||||| |||||||| |||||||||||||||
Sbjct: 53359 cctgtttgtgatgtcgctcttcggttttatatttaaga 53396



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 209   gaacttagggaagtcattcctacagcgctctggtacaagtc 249
             |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                         
Query: 254   aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 313
             ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050

                     
Query: 314   ggggctgg 321
             ||||||||
Sbjct: 53051 ggggctgg 53058
to top
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 330    cctgtttgtgatgccgctcttcagttttatatttaaga 367
              ||||||||||||| |||||||| |||||||||||||||
Sbjct: 127319 cctgtttgtgatgtcgctcttcggttttatatttaaga 127356



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 209    gaacttagggaagtcattcctacagcgctctggtacaagtc 249
              |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                          
Query: 254    aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 313
              ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010

                      
Query: 314    ggggctgg 321
              ||||||||
Sbjct: 127011 ggggctgg 127018
to top
>gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9, and 10
          Length = 1772

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 191 ctgctcggtgtgtttcctgaa 211
           |||||||||||||||||||||
Sbjct: 22  ctgctcggtgtgtttcctgaa 42
to top
>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence
          Length = 187416

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    taacaacagaaactccaacaa 299
              |||||||||||||||||||||
Sbjct: 153736 taacaacagaaactccaacaa 153756
to top
>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 8      aaatattagtcaacaatggtacaaa 32
              |||||||||||||||||| ||||||
Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
to top
>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 279    taacaacagaaactccaacaa 299
              |||||||||||||||||||||
Sbjct: 170731 taacaacagaaactccaacaa 170711
to top
>emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chromosome 2, complete
             sequence
          Length = 126358

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   ctgctcggtgtgtttcctgaa 211
             |||||||||||||||||||||
Sbjct: 11160 ctgctcggtgtgtttcctgaa 11140
to top
>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein
            (DDB0220518), partial mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  actgtaacaacagaaactccaaca 298
            ||||||||||||| ||||||||||
Sbjct: 8839 actgtaacaacagtaactccaaca 8862
to top
>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ctttctcaatattgtcttcc 179
             ||||||||||||||||||||
Sbjct: 12002 ctttctcaatattgtcttcc 11983
to top
>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ctttctcaatattgtcttcc 179
              ||||||||||||||||||||
Sbjct: 195772 ctttctcaatattgtcttcc 195753
to top
>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the
             5' end of the BTBD4 gene for BTB (POZ) domain containing
             4, part of a gene for a tissue plasminogen activator
             protein and two CpG islands, complete sequence
          Length = 41932

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   cctttctgctcggtgtgttt 205
             ||||||||||||||||||||
Sbjct: 12460 cctttctgctcggtgtgttt 12441
to top
>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21,
             complete sequence
          Length = 205143

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   gtgatgccgctcttcagttt 356
             ||||||||||||||||||||
Sbjct: 50891 gtgatgccgctcttcagttt 50910
to top
>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18,
              complete sequence
          Length = 164758

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tgtttcaggctctctttctc 166
              ||||||||||||||||||||
Sbjct: 128434 tgtttcaggctctctttctc 128415
to top
>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tatgtttcaggctctctttc 164
             ||||||||||||||||||||
Sbjct: 64829 tatgtttcaggctctctttc 64810
to top
>ref|XM_684436.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like
           isoform 1 (LOC561033), partial mRNA
          Length = 1355

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 gtgatgccgctcttcagttt 356
           ||||||||||||||||||||
Sbjct: 848 gtgatgccgctcttcagttt 829
to top
>ref|XM_680044.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like
           isoform 2 (LOC557064), mRNA
          Length = 1822

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 gtgatgccgctcttcagttt 356
           ||||||||||||||||||||
Sbjct: 917 gtgatgccgctcttcagttt 898
to top
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gtcagttcctgtttgtgatg 342
              ||||||||||||||||||||
Sbjct: 106996 gtcagttcctgtttgtgatg 106977
to top
>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence
          Length = 145165

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     gggtacaaaatattagtcaacaat 24
             ||||| ||||||||||||||||||
Sbjct: 25853 gggtagaaaatattagtcaacaat 25876
to top
>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      tacaaaatattagtcaacaa 23
              ||||||||||||||||||||
Sbjct: 131842 tacaaaatattagtcaacaa 131823
to top
>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  tatgtttcaggctctctttc 164
            ||||||||||||||||||||
Sbjct: 2684 tatgtttcaggctctctttc 2665
to top
>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20,
              complete sequence
          Length = 159094

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    gtgatgccgctcttcagttt 356
              ||||||||||||||||||||
Sbjct: 136435 gtgatgccgctcttcagttt 136416
to top
>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tgtttcaggctctctttctc 166
             ||||||||||||||||||||
Sbjct: 91226 tgtttcaggctctctttctc 91207
to top
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       acaaaatattagtcaacaat 24
               ||||||||||||||||||||
Sbjct: 2555987 acaaaatattagtcaacaat 2555968
to top
>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete
             sequence
          Length = 172826

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aaatattagtcaacaatggt 27
             ||||||||||||||||||||
Sbjct: 59691 aaatattagtcaacaatggt 59710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,040,981
Number of Sequences: 3902068
Number of extensions: 4040981
Number of successful extensions: 68694
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68610
Number of HSP's gapped (non-prelim): 82
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top