>FABB_HAEIN (P43710) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase I)
           (Beta-ketoacyl-ACP synthase I) (KAS I)
          Length = 406

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 175 YPVTYTLQSHIYKGLASNHPLESISYKLQSLCTRFSHC 288
           Y VT T+ S +   LA+ + +  ++Y + S C   +HC
Sbjct: 131 YAVTKTMASSVSACLATPYKIRGVNYSMSSACATSAHC 168

>CSN7_ARATH (Q94JU3) COP9 signalosome complex subunit 7 (CSN complex subunit 7)|
           (FUSCA protein 5) (FUSCA5)
          Length = 260

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -2

Query: 357 EGLTLMQKSLAMKPDLEVLSNEVTMGEPS 271
           EG+  ++KSL+MK D+++  N+   GEPS
Sbjct: 211 EGVEEVKKSLSMKGDVDIRGNKEMFGEPS 239

>GATB_METMA (Q8PXJ0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 495

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  LRDSKSSRFSTKYDLLAQHYHCNGLTSKIYLTDF 130
           L D+K +RF  +Y +   H     LTSKI L DF
Sbjct: 298 LPDAKRARFMEQYGITDMH--ARALTSKIMLADF 329

>SWI6_KLULA (P40418) Regulatory protein SWI6 (Cell-cycle box factor, chain|
           SWI6) (Trans-acting activator of HO endonuclease gene)
           (MBF subunit P90)
          Length = 769

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +3

Query: 126 TSRA*NEAPKALGHESIPRYIYPTKPYIQRSSF*SSIGEHKLQTTKSVHSVLPL*LRYSK 305
           TSR     P  + HE +     PTK +  +S     + +H L T  ++   LP    YS 
Sbjct: 170 TSRISGGEPDTVKHELLDLPDSPTKRHQTKSVSKIPVFQHDLPTVSTLQKTLPPVSNYSN 229

Query: 306 PRDQAS*LTISASMLGPQTS 365
             ++A   T+   +L P+T+
Sbjct: 230 D-ERAKLETLLQRILFPETT 248

>FABB_BUCAI (P57193) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase I)
           (Beta-ketoacyl-ACP synthase I) (KAS I)
          Length = 406

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 115 LSN*LHGLKMRHLKHSDMRAYPVTYTLQSHIYKGLASNHPLESISYKLQSLCTRFSHC 288
           L++ +H +K +H+    +  Y    T+ S I   L++   +  ++Y + S C   +HC
Sbjct: 114 LTSDIHLMKNKHISKG-ISPYLAVKTMPSGISACLSTLFKIYGVTYSISSACATSAHC 170

>GATB_METAC (Q8THJ0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 495

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  LRDSKSSRFSTKYDLLAQHYHCNGLTSKIYLTDF 130
           L D+K +RF  +Y +   H     LTSKI L DF
Sbjct: 298 LPDAKRTRFIEQYGITDMH--ARALTSKIMLADF 329

>RPOB_PORCN (Q9F3X8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1270

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 151 LKHSDMRAYPVTYTLQSHIYKGLASNHPLESISYKLQSLCTRFSHCNFVT 300
           L+  D    P  YTL   I +GL  N PL++   K++  CT   H +F T
Sbjct: 69  LEFLDYYIDPPRYTLDECISRGLTYNVPLKA---KMKLYCTDPEHEDFET 115

>FABB_ECOLI (P0A953) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase I)
           (Beta-ketoacyl-ACP synthase I) (KAS I)
          Length = 406

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 175 YPVTYTLQSHIYKGLASNHPLESISYKLQSLCTRFSHC 288
           Y VT  + S +   LA+   +  ++Y + S C   +HC
Sbjct: 132 YVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHC 169

>FABB_ECOL6 (P0A954) 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase I)
           (Beta-ketoacyl-ACP synthase I) (KAS I)
          Length = 406

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 175 YPVTYTLQSHIYKGLASNHPLESISYKLQSLCTRFSHC 288
           Y VT  + S +   LA+   +  ++Y + S C   +HC
Sbjct: 132 YVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHC 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,831,942
Number of Sequences: 219361
Number of extensions: 933214
Number of successful extensions: 1946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)