ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter ... 30 3.4
2MATK_HELBU (Q9XPN6) Maturase K (Intron maturase) 29 4.4
3HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2) 28 9.9
4YN60_YEAST (P42840) Hypothetical 32.3 kDa protein in KRE1-HXT14 ... 28 9.9

>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute|
           carrier family 6 member 18)
          Length = 628

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -3

Query: 262 IQRWCWSDEAIGQLCFVSYLHSTCIFPKENNVWDKCSHFWLG*IYSIHISLKFYMLMFVS 83
           + RW   +   G +C V +L +TC   +  N       +WL    +   SL   ML F+ 
Sbjct: 435 LPRWVPKEALTGLVCLVCFLSATCFTLQSGN-------YWLEIFDNFAASLNLLMLAFLE 487

Query: 82  I 80
           +
Sbjct: 488 V 488



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>MATK_HELBU (Q9XPN6) Maturase K (Intron maturase)|
          Length = 515

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 172 NVWDKCSHFWLG*IYSIHIS----LKFYMLMFVSIPTIRPESVRLAYILNLFI 26
           N W    +FW    Y IHI+      FY + ++S   I P +V+   + NLF+
Sbjct: 309 NFWQYYLYFWSK-PYRIHINQLSNYSFYFMGYISSVLINPSAVKNQMLENLFL 360



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>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)|
          Length = 288

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 330 PPPHSHRITDIFSFRRSRPLYGSFKGGAG 244
           P PH HRIT+ F     RP +G  K   G
Sbjct: 41  PHPHPHRITNFFIDNILRPEFGRRKEAGG 69



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>YN60_YEAST (P42840) Hypothetical 32.3 kDa protein in KRE1-HXT14 intergenic|
           region
          Length = 284

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 396 ILSIQIYGGLHASEYEK-IVHDVPPPHSHRITDIFSFRRSRPLYGSFKGGAGQMKL*DNF 220
           I S + YG    S  EK +  D     SH  TD F  +R   LYG   GGA  + +   F
Sbjct: 111 IYSYRGYGNSEGSPSEKGLKLDADCVISHLSTDSFHSKRKLVLYGRSLGGANALYIASKF 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,474,222
Number of Sequences: 219361
Number of extensions: 1228717
Number of successful extensions: 2386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2386
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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