ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05c10 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/33 (78%), Positives = 32/33 (96%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 305 LDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1058 LDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/33 (78%), Positives = 32/33 (96%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 305 LDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1063 LDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 51.6 bits (122), Expect = 4e-07 Identities = 25/33 (75%), Positives = 28/33 (84%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 305 LDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1056 LDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 51.2 bits (121), Expect = 6e-07 Identities = 24/33 (72%), Positives = 30/33 (90%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 305 LDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1056 LDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 204 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 308 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 90 VMFDNALLINNGDSPLK-FYISTDKVTLLSKSKTEKRNVATNTCRGS 227 V F N L ++ S +K FY ++V L+S K + N N CRGS Sbjct: 394 VTFKNILETSDDKSVVKRFYNPDNRVPLVSIMKKDSLNRPLNYCRGS 440
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 379 EEVAKAMAVPVEELSKRVEELTR 311 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>ZN569_MOUSE (Q80W31) Zinc finger protein 569 (Zinc finger protein 74) (Zfp-74)| (Mszf21) Length = 679 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Frame = +3 Query: 114 INNGDSPL------KFYISTDKVTLLSKSKTEKRNVATNTCRGSFSGRQRFTTQRK---R 266 ++ G+ P K + + +T+ +S T ++ CR SFS ++ F T +K R Sbjct: 368 VHTGEKPYECGECGKAFSQSSALTVHIRSHTGEKPYECKECRKSFSHKKNFITHQKIHTR 427 Query: 267 TNKTGCTRHG 296 GC G Sbjct: 428 EKPYGCNECG 437
>Y1901_STRPN (Q97NV8) Hypothetical RNA methyltransferase SP1901 (EC 2.1.1.-)| Length = 451 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +2 Query: 71 YTKLSGCHV*QCTADKQRRFTTKILHQHR*SYTLIKVENRE 193 Y + GC + DKQ F T +LHQ + EN E Sbjct: 76 YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116
>Y1717_STRR6 (Q8DNH6) Hypothetical RNA methyltransferase spr1717 (EC 2.1.1.-)| Length = 451 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +2 Query: 71 YTKLSGCHV*QCTADKQRRFTTKILHQHR*SYTLIKVENRE 193 Y + GC + DKQ F T +LHQ + EN E Sbjct: 76 YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 10/43 (23%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMA----------VPVEELSKRVEELTRLH 305 LD++R KM+EV + ++L K VEELTR+H Sbjct: 1098 LDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 10/43 (23%) Frame = -2 Query: 403 LDLNRSKMEEVAKAMA----------VPVEELSKRVEELTRLH 305 LD++R KM+EV + ++L K VEELTR+H Sbjct: 1098 LDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 287 CTSCFICSFSLCCKPL 240 CT CF+C+F+L KPL Sbjct: 55 CTLCFLCAFNLENKPL 70
>RPF53_MOUSE (Q8K202) DNA-directed RNA polymerase I-associated factor 53 kDa| subunit (EC 2.7.7.6) (RNA polymerase I-associated factor 1) Length = 482 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +3 Query: 90 VMFDNALLINNGDSPLKFYISTDKVTLLSKSKTEKRNVATNTCRGSFSG 236 V F N L N GD Y STD L++ + R VA T R S+ G Sbjct: 41 VQFSNGKLQNPGDMRFTLYNSTD---LVNPRQRSHRIVAAETDRLSYVG 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,099,086 Number of Sequences: 219361 Number of extensions: 826771 Number of successful extensions: 2358 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2310 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2358 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
