ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
5dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
6dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB ... 101 2e-18
7ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predic... 98 3e-17
8gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence 94 4e-16
9gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 42 1.4
10ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 1.4
11gb|AY104362.1| Zea mays PCO060159 mRNA sequence 42 1.4
12ref|XM_482858.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
13ref|XM_518367.1| PREDICTED: Pan troglodytes similar to Helicase ... 40 5.4
14ref|NM_006929.4| Homo sapiens superkiller viralicidic activity 2... 40 5.4
15gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 5.4
16gb|AF019413.1|HSMHCT8S22 Homo sapiens HLA class III region conta... 40 5.4
17gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility l... 40 5.4
18ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA 40 5.4
19gb|BC015758.1| Homo sapiens superkiller viralicidic activity 2-l... 40 5.4
20ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.4
21ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.4
22ref|NM_021337.2| Mus musculus superkiller viralicidic activity 2... 40 5.4
23gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.4
24ref|XM_745943.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.4
25gb|BC062925.1| Mus musculus superkiller viralicidic activity 2-l... 40 5.4
26emb|AL662849.8| Human DNA sequence from clone XXbac-116I9 on chr... 40 5.4
27ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosi... 40 5.4
28gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, com... 40 5.4
29gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, co... 40 5.4
30emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter ... 40 5.4
31gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se... 40 5.4
32emb|AL844853.23| Human DNA sequence from clone DAQB-331I12 on ch... 40 5.4
33ref|NG_000013.2| Homo sapiens MHC class III complement gene clus... 40 5.4
34gb|BC065999.1| Mus musculus superkiller viralicidic activity 2-l... 40 5.4
35emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 5.4
36emb|CR753845.11| Human DNA sequence from clone DADB-112B14 on ch... 40 5.4
37emb|Y00864.1|MMCKIT Mouse c-kit mRNA 40 5.4
38emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 40 5.4
39emb|AL645922.11| Human DNA sequence from clone XXbac-116M5 on ch... 40 5.4
40emb|AL049547.10|HSDJ34F7 Human DNA sequence from clone RP1-34F7 ... 40 5.4
41emb|CR759782.7| Human DNA sequence from clone DAMC-178C20 on chr... 40 5.4
42emb|CR788238.10| Human DNA sequence from clone DAMC-45E14 on chr... 40 5.4
43emb|BX571809.10| Zebrafish DNA sequence from clone CH211-222G23 ... 40 5.4
44emb|CR753822.3| Human DNA sequence from clone DASS-264H16 on chr... 40 5.4
45emb|BX571845.5| Zebrafish DNA sequence from clone DKEY-18P12 in ... 40 5.4
46emb|CR616648.1| full-length cDNA clone CS0CAP003YA05 of Thymus o... 40 5.4
47gb|AC093895.3| Homo sapiens BAC clone RP11-716M23 from 4, comple... 40 5.4
48gb|AC093906.3| Homo sapiens BAC clone RP11-742B18 from 4, comple... 40 5.4
49dbj|AK139051.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 5.4
50gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region ... 40 5.4
51ref|NG_004658.1| Homo sapiens MHC class III complement gene clus... 40 5.4
52dbj|AK159854.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 5.4
53dbj|AK029763.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.4
54gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 5.4
55gb|BC023478.1| Mus musculus superkiller viralicidic activity 2-l... 40 5.4
56ref|NG_005163.1| Homo sapiens MHC class III complement gene clus... 40 5.4
57dbj|AK087810.1| Mus musculus 2 days pregnant adult female ovary ... 40 5.4
58gb|U09877.1|HSU09877 Human helicase-like protein (HLP) mRNA, com... 40 5.4
59dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
60gb|AF163151.2|AF163151 Homo sapiens dentin sialophosphoprotein p... 40 5.4
61ref|NM_213559.1| Rattus norvegicus superkiller viralicidic activ... 40 5.4
62dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.4
63dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
64emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 5.4
65dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
66gb|AF059675.1|AF059675 Homo sapiens putative RNA helicase Ski2w ... 40 5.4
67gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.4
68emb|CT025759.14| Mouse DNA sequence from clone RP24-317H19 on ch... 40 5.4
69gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 40 5.4
70gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.4
71dbj|AB209605.1| Homo sapiens mRNA for DJ34F7.7 (Superkiller vira... 40 5.4
72dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 5.4
73emb|Z48796.1|HSSKIWMR H.sapiens Ski-W mRNA for helicase 40 5.4
74emb|X98378.1|HSSKI2WGN H.sapiens SKI2W gene 40 5.4 
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                         
Query: 300   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
             |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                        
Query: 360   atcgccttggccacctcctccatcttg 386
             ||  |||||||||||||||||||||||
Sbjct: 77922 atacccttggccacctcctccatcttg 77896
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                            
Query: 300      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
                |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                           
Query: 360      atcgccttggccacctcctccatcttg 386
                ||  |||||||||||||||||||||||
Sbjct: 29299265 atacccttggccacctcctccatcttg 29299239
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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                       
Query: 300 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                      
Query: 360 atcgccttggccacctcctccatcttg 386
           ||  |||||||||||||||||||||||
Sbjct: 674 atacccttggccacctcctccatcttg 648
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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                        
Query: 300  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                       
Query: 360  atcgccttggccacctcctccatcttg 386
            ||  |||||||||||||||||||||||
Sbjct: 3331 atacccttggccacctcctccatcttg 3305
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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                       
Query: 300 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                      
Query: 360 atcgccttggccacctcctccatcttg 386
           ||  |||||||||||||||||||||||
Sbjct: 674 atacccttggccacctcctccatcttg 648
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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                        
Query: 300  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 359
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                       
Query: 360  atcgccttggccacctcctccatcttg 386
            ||  |||||||||||||||||||||||
Sbjct: 3331 atacccttggccacctcctccatcttg 3305
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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 302  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 361
            |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                     
Query: 362  cgccttggccacctcctccatcttg 386
              |||||||||||||||||||||||
Sbjct: 3213 acccttggccacctcctccatcttg 3189
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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                       
Query: 312 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 371
           ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                          
Query: 372 acctcctccatcttg 386
           |||||||||||||||
Sbjct: 306 acctcctccatcttg 320
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 63      ctgataattataccaaacttt 83
               |||||||||||||||||||||
Sbjct: 1401026 ctgataattataccaaacttt 1401046
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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 362 cgccttggccacctcctccat 382
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244
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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 361
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                    
Query: 362 cgccttggccacctcctccatcttg 386
            ||||||| |||| |||||||||||
Sbjct: 800 agccttggacaccacctccatcttg 776
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>ref|XM_482858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  cttggacagctcctcgacag 351
            ||||||||||||||||||||
Sbjct: 1413 cttggacagctcctcgacag 1394
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>ref|XM_518367.1| PREDICTED: Pan troglodytes similar to Helicase SKI2W (Helicase-like
           protein) (HLP) (LOC462574), mRNA
          Length = 455

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcatgtttgacaatgcactg 110
           ||||||||||||||||||||
Sbjct: 227 tcatgtttgacaatgcactg 246
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>ref|NM_006929.4| Homo sapiens superkiller viralicidic activity 2-like (S. cerevisiae)
            (SKIV2L), mRNA
          Length = 4187

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3670 tcatgtttgacaatgcactg 3689
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tttgacaatgcactgctgat 115
              ||||||||||||||||||||
Sbjct: 495988 tttgacaatgcactgctgat 496007
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>gb|AF019413.1|HSMHCT8S22 Homo sapiens HLA class III region containing tenascin X (tenascin-X)
             gene, partial cds; cytochrome P450 21-hydroxylase
             (CYP21B), complement component C4 (C4B) G11, helicase
             (SKI2W), RD, complement factor B (Bf), and  complement
             component C2 (C2) genes, complete cds
          Length = 109646

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 56573 tcatgtttgacaatgcactg 56554
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>gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility locus class III region: complement
              C4 (C4) and cytochrome P450 hydroxylase A (CYP21OH-A)
              genes, complete cds; slp pseudogene, complete sequence;
              NG6, SKI, and complement factor B (Bf) genes, complete cds;
              and complement factor C2 (C2) gene, partial cds
          Length = 149886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     tcatgtttgacaatgcactg 110
              ||||||||||||||||||||
Sbjct: 114615 tcatgtttgacaatgcactg 114596
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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  cgccatcgccttggccacct 375
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
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>gb|BC015758.1| Homo sapiens superkiller viralicidic activity 2-like (S. cerevisiae),
            mRNA (cDNA clone MGC:23108 IMAGE:4874270), complete cds
          Length = 3818

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3283 tcatgtttgacaatgcactg 3302
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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  ccttggccacctcctccatc 383
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 364  ccttggccacctcctccatc 383
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529
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>ref|NM_021337.2| Mus musculus superkiller viralicidic activity 2-like (S. cerevisiae )
            (Skiv2l), mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3324 tcatgtttgacaatgcactg 3343
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 359     catcgccttggccacctcctccat 382
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245
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>ref|XM_745943.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g11530)
           partial mRNA
          Length = 438

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ctgctgataaacaacggcga 127
           ||||||||||||||||||||
Sbjct: 278 ctgctgataaacaacggcga 259
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>gb|BC062925.1| Mus musculus superkiller viralicidic activity 2-like (S. cerevisiae
            ), mRNA (cDNA clone IMAGE:6850994), partial cds
          Length = 4010

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3379 tcatgtttgacaatgcactg 3398
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>emb|AL662849.8| Human DNA sequence from clone XXbac-116I9 on chromosome 6 contains the
             C2 gene for complement component 2, the Bf gene for
             B-factor, properdin, the RDBP gene for RD RNA-binding
             protein, the SKIV2L gene for superkiller viralicidic
             activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3
             homolog Z (C. elegans), the STK19 gene for
             serine/threonine kinase 19, the C4A gene for complement
             component 4B, the 3' end of the CYP21A2 gene for
             cytochrome P450, subfamily XXIA (steroid 21-hydroxylase,
             congenital adrenal hyperplasia), polypeptide 2 and four
             CpG islands, complete sequence
          Length = 88459

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 55138 tcatgtttgacaatgcactg 55157
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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gtctcgtcagctcctccacc 329
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083
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>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   ctcctccatcttggacctgt 393
             ||||||||||||||||||||
Sbjct: 32235 ctcctccatcttggacctgt 32254
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>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    ctcctccatcttggacctgt 393
              ||||||||||||||||||||
Sbjct: 203840 ctcctccatcttggacctgt 203859
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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 356 cgccatcgccttggccacct 375
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11
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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aaagttacactcttatcaaa 178
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361
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>emb|AL844853.23| Human DNA sequence from clone DAQB-331I12 on chromosome 6 Contains the
              NEU1 gene for sialidase 1 (lysosomal sialidase), the
              C6orf29 gene for chromosome 6 open reading frame 29, the
              BAT8 gene for HLA-B associated transcript 8, a novel
              transcript DAQB-331I12.5, the ZBTB12 gene (previously
              C6orf46) for zinc finger and BTB domain containing 12, the
              C2 gene for complement component 2, the Bf gene for
              B-factor, properdin, the RDBP gene for RD RNA binding
              protein, the SKIV2L gene for superkiller viralicidic
              activity 2-like (S. cerevisiae), the DOM3Z gene for dom-3
              homolog Z (C. elegans), the STK19 gene for serine/threonine
              kinase 19, the 5' end of the C4A gene for complement
              component 4A and 8 CpG isalnds, complete sequence
          Length = 153464

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tcatgtttgacaatgcactg 110
              ||||||||||||||||||||
Sbjct: 123094 tcatgtttgacaatgcactg 123113
to top
>ref|NG_000013.2| Homo sapiens MHC class III complement gene cluster, monomodular haplotype
              (MCGC@) on chromosome 6
          Length = 180017

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     tcatgtttgacaatgcactg 110
              ||||||||||||||||||||
Sbjct: 126944 tcatgtttgacaatgcactg 126925
to top
>gb|BC065999.1| Mus musculus superkiller viralicidic activity 2-like (S. cerevisiae
            ), mRNA (cDNA clone MGC:90095 IMAGE:5686586), complete
            cds
          Length = 3939

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3296 tcatgtttgacaatgcactg 3315
to top
>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 246   tttacaacacagcgaaaacgaacaaata 273
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
to top
>emb|CR753845.11| Human DNA sequence from clone DADB-112B14 on chromosome 6, complete
             sequence
          Length = 96090

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 14098 tcatgtttgacaatgcactg 14117
to top
>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  cgccatcgccttggccacct 375
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346
to top
>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 4/11
          Length = 346406

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 28259 tcatgtttgacaatgcactg 28240
to top
>emb|AL645922.11| Human DNA sequence from clone XXbac-116M5 on chromosome 6 contains the
             C2 gene for complement component 2 (C2, CO2), the Bf gene
             for B-factor, properdin (Bf, GBG, CFAB, PBF2), the RDBP
             gene for RD RNA-binding protein (RDBP, RD, RDP, D6S45,
             NELF-E), the SKIV2L gene for superkiller viralicidic
             activity 2-like (S. cerevisiae) (SKIV2L, HLP, SKI2, DDX13,
             SKI2W, SKIV2), the DOM3Z gene for dom-3 homolog Z (C.
             elegans) (DOM3Z, NG6, DOM3L), the STK19 gene for
             serine/threonine kinase 19 (STK19, G11, RP1, D6S60,
             D6S60E, HLA-RP1), the C4A gene for complement component 4A
             (C4A, C4S, CO4), a cytochrome P450, subfamily XXIA
             (steroid 21-hydroxylase), polypeptide 1 pseudogene
             (CYP21A1P), a tenascin XA pseudogene (TNXA, XA, XB, TNX,
             HXBL, D6S103E), a serine/threonine kinase 19 (STK19, G11,
             RP1, D6S60, D6S60E, HLA-RP1) pseudogene, the C4B gene for
             complement component 4B (C4B, C4F, CO4), the CYP21A2 gene
             for cytochrome P450, subfamily XXIA (steroid
             21-hydroxylase, congenital adrenal hyperplasia),
             polypeptide 2 (CYP21A2, CAH1, CPS1, CA21H, CYP21, CYP21B,
             P450c21B), the 3' end of the TNXB gene for tenascin XB
             (TNXB, XB, TNX, XBS, HXBL, TENX, TNXB1, TNXB2, TNXBS) and
             four CpG islands, complete sequence
          Length = 180559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 65237 tcatgtttgacaatgcactg 65256
to top
>emb|AL049547.10|HSDJ34F7 Human DNA sequence from clone RP1-34F7 on chromosome 6p21.2-21.33
              Contains the 3' end of the gene for CREB-RP (G13), the gene
              for tenascin XB and XA, the CYP21A2 gene for cytochrome
              P450, subfamily XXIA (steroid 21-hydroxylase), polypeptide
              2 (CYP21, P450c21B), the C4A gene for complement component
              4A, the gene for RP MHC class III complement protein (G11),
              the DOM3Z gene for DOM-3 (C. elegans) homolog Z, the SKIV2L
              gene for superkiller viralicidic activity 2 (S. cerevisiae
              homolog)-like (SKI2W) and the gene for RD (RDBP). Contains
              ESTs, STSs, GSSs and five putative CpG islands, complete
              sequence
          Length = 129811

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     tcatgtttgacaatgcactg 110
              ||||||||||||||||||||
Sbjct: 117007 tcatgtttgacaatgcactg 116988
to top
>emb|CR759782.7| Human DNA sequence from clone DAMC-178C20 on chromosome 6, complete
             sequence
          Length = 79825

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 66745 tcatgtttgacaatgcactg 66764
to top
>emb|CR788238.10| Human DNA sequence from clone DAMC-45E14 on chromosome 6, complete
            sequence
          Length = 108340

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 2849 tcatgtttgacaatgcactg 2830
to top
>emb|BX571809.10| Zebrafish DNA sequence from clone CH211-222G23 in linkage group 9,
             complete sequence
          Length = 193388

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tatgaaacctcaagcttaaa 23
             ||||||||||||||||||||
Sbjct: 47175 tatgaaacctcaagcttaaa 47156
to top
>emb|CR753822.3| Human DNA sequence from clone DASS-264H16 on chromosome 6, complete
            sequence
          Length = 10388

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 5250 tcatgtttgacaatgcactg 5269
to top
>emb|BX571845.5| Zebrafish DNA sequence from clone DKEY-18P12 in linkage group 9,
           complete sequence
          Length = 131458

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   tatgaaacctcaagcttaaa 23
           ||||||||||||||||||||
Sbjct: 109 tatgaaacctcaagcttaaa 128
to top
>emb|CR616648.1| full-length cDNA clone CS0CAP003YA05 of Thymus of Homo sapiens
           (human)
          Length = 518

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcatgtttgacaatgcactg 110
           ||||||||||||||||||||
Sbjct: 22  tcatgtttgacaatgcactg 41
to top
>gb|AC093895.3| Homo sapiens BAC clone RP11-716M23 from 4, complete sequence
          Length = 171135

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    attccaagatggttatcaccgttt 54
             |||||| |||||||||||||||||
Sbjct: 11929 attccatgatggttatcaccgttt 11906
to top
>gb|AC093906.3| Homo sapiens BAC clone RP11-742B18 from 4, complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     attccaagatggttatcaccgttt 54
              |||||| |||||||||||||||||
Sbjct: 123576 attccatgatggttatcaccgttt 123553
to top
>dbj|AK139051.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730004N10 product:Similar to
            superkiller viralicidic activity 2-like (S. cerevisiae)
            (Fragment) homolog [Mus musculus], full insert sequence
          Length = 4121

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3398 tcatgtttgacaatgcactg 3417
to top
>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 356 cgccatcgccttggccacct 375
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56
to top
>ref|NG_004658.1| Homo sapiens MHC class III complement gene cluster, bimodular haplotype
             (MCGC2@) on chromosome 6
          Length = 201523

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 41755 tcatgtttgacaatgcactg 41774
to top
>dbj|AK159854.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420034G16 product:Superkiller viralicidic
            activity 2-like, full insert sequence
          Length = 3966

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3325 tcatgtttgacaatgcactg 3344
to top
>dbj|AK029763.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930534J06 product:superkiller viralicidic
            activity 2-like (S. cerevisiae ), full insert sequence
          Length = 3907

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3313 tcatgtttgacaatgcactg 3332
to top
>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aaagttacactcttatcaaa 178
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010
to top
>gb|BC023478.1| Mus musculus superkiller viralicidic activity 2-like (S. cerevisiae
            ), mRNA (cDNA clone IMAGE:5007559), partial cds
          Length = 2541

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 1928 tcatgtttgacaatgcactg 1947
to top
>ref|NG_005163.1| Homo sapiens MHC class III complement gene cluster, monomodular
             haplotype (MCGC3@) on chromosome 6
          Length = 164376

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 41755 tcatgtttgacaatgcactg 41774
to top
>dbj|AK087810.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
            full-length enriched library, clone:E330024C01
            product:superkiller viralicidic activity 2-like (S.
            cerevisiae ), full insert sequence
          Length = 4528

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3960 tcatgtttgacaatgcactg 3979
to top
>gb|U09877.1|HSU09877 Human helicase-like protein (HLP) mRNA, complete cds
          Length = 3909

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3392 tcatgtttgacaatgcactg 3411
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 332      cttggacagctcctcgacag 351
                ||||||||||||||||||||
Sbjct: 22995444 cttggacagctcctcgacag 22995425
to top
>gb|AF163151.2|AF163151 Homo sapiens dentin sialophosphoprotein precursor (DSPP) gene,
            complete cds
          Length = 9944

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 31   attccaagatggttatcaccgttt 54
            |||||| |||||||||||||||||
Sbjct: 2460 attccatgatggttatcaccgttt 2437
to top
>ref|NM_213559.1| Rattus norvegicus superkiller viralicidic activity 2-like (Skiv2l),
            mRNA
          Length = 3770

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3310 tcatgtttgacaatgcactg 3329
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cgccttggccacctcctcca 381
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468
to top
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    cttggacagctcctcgacag 351
              ||||||||||||||||||||
Sbjct: 169282 cttggacagctcctcgacag 169263
to top
>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   acagataaagttacactctt 172
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626
to top
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   cttggacagctcctcgacag 351
             ||||||||||||||||||||
Sbjct: 55172 cttggacagctcctcgacag 55153
to top
>gb|AF059675.1|AF059675 Homo sapiens putative RNA helicase Ski2w (SKI2W) gene, complete cds
          Length = 11008

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 9912 tcatgtttgacaatgcactg 9931
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     ccgccatcgccttggccacc 374
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919
to top
>emb|CT025759.14| Mouse DNA sequence from clone RP24-317H19 on chromosome 17, complete
             sequence
          Length = 171682

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcatgtttgacaatgcactg 110
             ||||||||||||||||||||
Sbjct: 68143 tcatgtttgacaatgcactg 68124
to top
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tttgacaatgcactgctgat 115
              ||||||||||||||||||||
Sbjct: 428871 tttgacaatgcactgctgat 428890
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     cgccttggccacctcctcca 381
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986
to top
>dbj|AB209605.1| Homo sapiens mRNA for DJ34F7.7 (Superkiller viralicidic activity 2
            -like variant protein
          Length = 4497

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3910 tcatgtttgacaatgcactg 3929
to top
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    tcttatcaaagtcgaaaaca 188
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594
to top
>emb|Z48796.1|HSSKIWMR H.sapiens Ski-W mRNA for helicase
          Length = 3874

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3333 tcatgtttgacaatgcactg 3352
to top
>emb|X98378.1|HSSKI2WGN H.sapiens SKI2W gene
          Length = 3796

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcatgtttgacaatgcactg 110
            ||||||||||||||||||||
Sbjct: 3286 tcatgtttgacaatgcactg 3305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,461,703
Number of Sequences: 3902068
Number of extensions: 3461703
Number of successful extensions: 63254
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62950
Number of HSP's gapped (non-prelim): 304
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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