ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05c07 |
|---|---|
| Clone Library Name | barley_pub |
>UL24_SHV21 (Q01005) Gene 20 protein| Length = 303 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 244 NAKQCKCERKKNYRLRRNMSHMVKLDTLSST 336 NA+ CK ++ N RLR N H K+ L++T Sbjct: 254 NARPCKKKQHNNKRLRNNRKHGGKVSRLTTT 284
>TS1R3_MOUSE (Q925D8) Taste receptor type 1 member 3 precursor (Sweet taste| receptor T1R3) (Saccharin preference protein) Length = 858 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = -2 Query: 184 VCLFQGVVGAVRDCALFFWSSMLLFHFSFFEACAGGWKRTIVALGVVLFGGQLSSCICLL 5 +CL G+ A ++ W S L+ + C G + L V+LF G+ SS CL Sbjct: 581 LCLVLGLALAALGLSVHHWDSPLVQASGGSQFCFGLICLGLFCLSVLLFPGRPSSASCLA 640 Query: 4 Q 2 Q Sbjct: 641 Q 641
>SCAM4_HUMAN (Q969E2) Secretory carrier-associated membrane protein 4 (Secretory| carrier membrane protein 4) Length = 229 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -2 Query: 220 FFWLKTETACGCVCLFQGVVGAVR-DCALFFWSSMLLFHFSF 98 F WL T CG VC F+ V A R D + F + +F F Sbjct: 75 FVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQF 116
>IF2_PROMP (Q7UZZ9) Translation initiation factor IF-2| Length = 1169 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +3 Query: 126 DQKKRAQSRTAPTTP*NKQTQPHAVSVFNQKNPYKTVWDECKTMQMRKEKKLPAQEEHV 302 +QK +A + T+P +P N K P +T WD+ ++ + K Q + V Sbjct: 439 NQKTKAPNSRLNTSPSPTAKKPARSFASNTKKPGRTDWDDSAKLEALRNKNPQKQRQKV 497
>IF2_CHLTR (O84098) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 11 TNTTRQLPPEQNHSKSYNCSFPPASTSFKEAEMEQQHR 124 T T Q P QN + SYN P+ TS + A +R Sbjct: 203 TEETTQQQPRQNDAASYNNKQQPSGTSSRPASSAPSYR 240
>IF2_CHLTA (Q3KMS4) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 11 TNTTRQLPPEQNHSKSYNCSFPPASTSFKEAEMEQQHR 124 T T Q P QN + SYN P+ TS + A +R Sbjct: 203 TEETTQQQPRQNDAASYNNKQQPSGTSSRPASSAPSYR 240
>FTSK_CLOPE (Q8XJS8) DNA translocase ftsK| Length = 796 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = +1 Query: 133 KKERNHALLRQHLEIN---RHNRMPSQFLTKRTLTKQSGMNAKQCKCERKKNYRLRRNMS 303 KKE+++ L + +++IN + ++MP T+ +Q G N+++ K E + + N++ Sbjct: 253 KKEKDNQL-KDNIKINDFKQESKMPRDLSLDNTIIEQRGFNSEKAKEEESIDKEISNNIA 311
>K0553_HUMAN (Q9UKJ3) Protein KIAA0553| Length = 1089 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Frame = +1 Query: 124 MTKKKERN-----HALLRQHLEINRHNRMPSQFLTKRTLTKQSG-MNAKQCKCERKKN 279 + KKER+ H ++H + ++H R P +++ +SG + K+ K +RKKN Sbjct: 249 LPSKKERSGKSHRHKKKKEHKKSSKHKRKPKADTEEKSSKAESGEKSKKRKKRKRKKN 306
>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5 precursor| Length = 1615 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 24 DSCPPNKTTPRATIVLFHPP 83 DSCPP+ T R+ LF PP Sbjct: 1588 DSCPPSPATERSYFHLFPPP 1607
>ICSB_SHIFL (P33546) Virulence protein icsB| Length = 494 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 217 RTLTKQSGMNAKQCKCERKKNYRLRRNMSHMVKLDTLSSTK 339 RTL+ + Q E+ KNYRL S ++ L+TL+S K Sbjct: 42 RTLSTINAKINSQILNEQLKNYRLENQKSLLLFLNTLASEK 82
>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 737 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +3 Query: 177 KQTQPHAVSVFNQKNPYKTVWD-ECKTMQMRKEKKLPAQEEHVPHGEVGHPE*YKNNPVT 353 K+ QPH + NP+ T+ D E + + E+K EE++ E + +P Sbjct: 548 KEYQPHVIVSTTGPNPFTTLTDRELEEYRREVERKQKGSEENLDEAR----EQKEKSPPD 603 Query: 354 MPASP 368 PA P Sbjct: 604 QPAVP 608
>AOCY_BOVIN (O46406) Copper amine oxidase, lung isozyme precursor (EC 1.4.3.6)| (Amine oxidase [copper-containing]) (BOLAO) Length = 762 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 90 ASKKLKWNSSIDDQKKRAQSRTAPTTP*NKQTQPHAVSVFNQKNPYKTVWD 242 A + L NSS + + + A T K+T+P + SVFNQ +P+ D Sbjct: 610 AGRPLPQNSSTERAISWGRYQLAVTQ--RKETEPSSSSVFNQNDPWTPTVD 658
>AOC3_BOVIN (Q9TTK6) Membrane copper amine oxidase (EC 1.4.3.6)| (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) Length = 762 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 90 ASKKLKWNSSIDDQKKRAQSRTAPTTP*NKQTQPHAVSVFNQKNPYKTVWD 242 A + L NSS + + + A T K+T+P + SVFNQ +P+ D Sbjct: 610 AGRPLPQNSSTERAISWGRYQLAVTQ--RKETEPSSSSVFNQNDPWTPTVD 658
>TRHY_SHEEP (P22793) Trichohyalin| Length = 1549 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +1 Query: 223 LTKQSGMNAKQCKCERKKN 279 L + SG+N K+ KCERK N Sbjct: 89 LGQASGLNEKEAKCERKGN 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,399,377 Number of Sequences: 219361 Number of extensions: 1055353 Number of successful extensions: 2935 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2935 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
