Clone Name | rbastl05c07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY106264.1| Zea mays PCO124599 mRNA sequence Length = 1372 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 333 tacaaaaataatcctgtgacaatgc 357 ||||||||||||||||||||||||| Sbjct: 939 tacaaaaataatcctgtgacaatgc 915
>ref|NM_020896.2| Homo sapiens oxysterol binding protein-like 5 (OSBPL5), transcript variant 1, mRNA Length = 3873 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3821 acaccttgaaataaacagacaca 3843
>ref|NM_145638.1| Homo sapiens oxysterol binding protein-like 5 (OSBPL5), transcript variant 2, mRNA Length = 3662 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3610 acaccttgaaataaacagacaca 3632
>emb|AL136918.1|HSM800191 Homo sapiens mRNA; cDNA DKFZp586H1719 (from clone DKFZp586H1719) Length = 3828 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3776 acaccttgaaataaacagacaca 3798
>emb|CR617583.1| full-length cDNA clone CS0DI054YD10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1576 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 1554 acaccttgaaataaacagacaca 1576
>dbj|AK056510.1| Homo sapiens cDNA FLJ31948 fis, clone NT2RP7007100, highly similar to Mus musculus domesticus partial mRNA for oxystyrol-binding protein Length = 3842 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3811 acaccttgaaataaacagacaca 3833
>dbj|AK055617.1| Homo sapiens cDNA FLJ31055 fis, clone HSYRA2000743 Length = 3229 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3197 acaccttgaaataaacagacaca 3219
>gb|AF392453.1|AF392453 Homo sapiens oxysterol-binding protein-like protein OSBPL5 (OSBPL5) mRNA, complete cds Length = 3810 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3774 acaccttgaaataaacagacaca 3796
>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence Length = 176226 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 10104 acaccttgaaataaacagacaca 10126
>gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence Length = 198599 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Minus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 48217 acaccttgaaataaacagacaca 48195
>gb|BC032646.1| Homo sapiens oxysterol binding protein-like 5, transcript variant 2, mRNA (cDNA clone MGC:44908 IMAGE:5518491), complete cds Length = 3650 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3574 acaccttgaaataaacagacaca 3596
>gb|BC039579.1| Homo sapiens oxysterol binding protein-like 5, transcript variant 1, mRNA (cDNA clone MGC:48715 IMAGE:5769002), complete cds Length = 3852 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3775 acaccttgaaataaacagacaca 3797
>dbj|AB074006.1| Homo sapiens OBPH1 mRNA for oxysterol binding protein homologue 1, complete cds Length = 3836 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 165 acaccttgaaataaacagacaca 187 ||||||||||||||||||||||| Sbjct: 3805 acaccttgaaataaacagacaca 3827
>gb|BT018483.1| Zea mays clone EL01N0424D02.d mRNA sequence Length = 1744 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 333 tacaaaaataatcctgtgacaa 354 |||||||||||||||||||||| Sbjct: 1176 tacaaaaataatcctgtgacaa 1155
>ref|NM_194535.1| Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015O22.1), mRNA Length = 2967 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 313 tgggatgaatgcaaaacaatg 333
>ref|NM_183723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 313 tgggatgaatgcaaaacaatg 333
>ref|XM_469298.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1128 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 772 tgggatgaatgcaaaacaatg 792
>ref|XM_471521.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1872 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 127 tgggatgaatgcaaaacaatg 147
>gb|AC148393.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0044A08 map near S6115, complete sequence Length = 158583 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 26703 tgggatgaatgcaaaacaatg 26683
>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062O09 map near S6115, complete sequence Length = 148654 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 120406 tgggatgaatgcaaaacaatg 120386
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 58268 tgggatgaatgcaaaacaatg 58288
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03, complete sequence Length = 141017 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 141005 tgggatgaatgcaaaacaatg 140985
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 112411 tgggatgaatgcaaaacaatg 112391
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 87951 tgggatgaatgcaaaacaatg 87971
>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete sequence Length = 55268 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 28862 tgggatgaatgcaaaacaatg 28842
>gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genomic sequence, complete sequence Length = 115815 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 107708 tgggatgaatgcaaaacaatg 107688
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0088F07, complete sequence Length = 139180 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 73885 tgggatgaatgcaaaacaatg 73905
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 98623 tgggatgaatgcaaaacaatg 98603
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2628 tgggatgaatgcaaaacaatg 2608
>gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0025G07, complete sequence Length = 167136 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 112262 tgggatgaatgcaaaacaatg 112242
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 17790 tgggatgaatgcaaaacaatg 17810
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 26609144 tgggatgaatgcaaaacaatg 26609124 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 19851872 tgggatgaatgcaaaacaatg 19851852 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 18153663 tgggatgaatgcaaaacaatg 18153683 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 17784407 tgggatgaatgcaaaacaatg 17784427
>emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 171852 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttgttcttttccacccgccag 84 ||||||||||||||||||||| Sbjct: 102603 ttgttcttttccacccgccag 102623
>gb|AC133337.5| Oryza sativa chromosome 3 BAC OSJNBa0023A13 genomic sequence, complete sequence Length = 72745 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 44871 tgggatgaatgcaaaacaatg 44851
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 536831 tgggatgaatgcaaaacaatg 536811
>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13, complete sequence Length = 163429 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 138758 tgggatgaatgcaaaacaatg 138778
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0079E01, complete sequence Length = 132870 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 93160 tgggatgaatgcaaaacaatg 93140
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 4439 tgggatgaatgcaaaacaatg 4419
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 11610207 tgggatgaatgcaaaacaatg 11610187 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 10639421 tgggatgaatgcaaaacaatg 10639441
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 23440984 aaaataatcctgtgacaatgc 23440964
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 12519429 tgggatgaatgcaaaacaatg 12519449 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 1946235 tgggatgaatgcaaaacaatg 1946255
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 12313255 tgggatgaatgcaaaacaatg 12313235 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 7999543 tgggatgaatgcaaaacaatg 7999563 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 536831 tgggatgaatgcaaaacaatg 536811
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2934130 tgggatgaatgcaaaacaatg 2934110
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 16253714 tgggatgaatgcaaaacaatg 16253694
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 13522375 tgggatgaatgcaaaacaatg 13522395
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 21193102 tgggatgaatgcaaaacaatg 21193122 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 14239290 tgggatgaatgcaaaacaatg 14239270 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 12235150 tgggatgaatgcaaaacaatg 12235130
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 26700467 tgggatgaatgcaaaacaatg 26700447 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 19844899 tgggatgaatgcaaaacaatg 19844879 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 18147204 tgggatgaatgcaaaacaatg 18147224 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 17777948 tgggatgaatgcaaaacaatg 17777968
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 14011443 tgggatgaatgcaaaacaatg 14011423 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 11450183 tgggatgaatgcaaaacaatg 11450203 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gggatgaatgcaaaacaatg 257 |||||||||||||||||||| Sbjct: 15188870 gggatgaatgcaaaacaatg 15188851
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 16510309 tgggatgaatgcaaaacaatg 16510329 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 11825801 tgggatgaatgcaaaacaatg 11825781
>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04, complete sequence Length = 188209 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 38648 tgggatgaatgcaaaacaatg 38668
>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete sequence Length = 136712 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 131958 tgggatgaatgcaaaacaatg 131938
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete sequence Length = 137297 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 4161 tgggatgaatgcaaaacaatg 4141
>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030M21 Length = 155970 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 32675 tgggatgaatgcaaaacaatg 32695
>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1460_H08 Length = 113514 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 30979 tgggatgaatgcaaaacaatg 30999
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 38086 tgggatgaatgcaaaacaatg 38066
>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B05 Length = 117057 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 81081 tgggatgaatgcaaaacaatg 81061
>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017O03 Length = 180651 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 125122 tgggatgaatgcaaaacaatg 125102
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1123E10 Length = 134641 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 102058 tgggatgaatgcaaaacaatg 102078
>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1654_A02 Length = 128520 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 119655 tgggatgaatgcaaaacaatg 119675
>gb|AY828170.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-12 noaCRR1 retrotransposon, partial sequence Length = 4424 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2518 tgggatgaatgcaaaacaatg 2538
>gb|AY828167.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-9 noaCRR1 retrotransposon, partial sequence Length = 5134 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 3192 tgggatgaatgcaaaacaatg 3212
>gb|AY828160.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-2 noaCRR1 retrotransposon, partial sequence Length = 4436 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2531 tgggatgaatgcaaaacaatg 2551
>gb|AY828121.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH8-13 noaCRR1 retrotransposon, partial sequence Length = 4834 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2681 tgggatgaatgcaaaacaatg 2701
>gb|AY828060.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH4-26 noaCRR1 retrotransposon, partial sequence Length = 3827 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 1953 tgggatgaatgcaaaacaatg 1973
>gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-10 noaCRR1 retrotransposon, partial sequence Length = 4140 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2499 tgggatgaatgcaaaacaatg 2519
>gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-4 noaCRR1 retrotransposon, partial sequence Length = 4258 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 2351 tgggatgaatgcaaaacaatg 2371
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1104G07 Length = 119643 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 43892 tgggatgaatgcaaaacaatg 43872
>dbj|AK120538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D16, full insert sequence Length = 3056 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 2562 aaaataatcctgtgacaatgc 2542
>dbj|AK103854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M08, full insert sequence Length = 2341 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 1830 aaaataatcctgtgacaatgc 1810
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 12320595 tgggatgaatgcaaaacaatg 12320575 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 8004642 tgggatgaatgcaaaacaatg 8004662 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 536828 tgggatgaatgcaaaacaatg 536808
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 12598736 tgggatgaatgcaaaacaatg 12598756 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 1954016 tgggatgaatgcaaaacaatg 1954036
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 23369175 aaaataatcctgtgacaatgc 23369155
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence Length = 164911 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 tgggatgaatgcaaaacaatg 257 ||||||||||||||||||||| Sbjct: 93217 tgggatgaatgcaaaacaatg 93197
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 61175 aaaataatcctgtgacaatgc 61195
>dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta2, partial cds Length = 3676 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aaaataatcctgtgacaatgc 357 ||||||||||||||||||||| Sbjct: 3164 aaaataatcctgtgacaatgc 3144
>ref|NM_103273.1| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G35710 mRNA, complete cds Length = 3658 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 agaagctgaaatggaacagc 116 |||||||||||||||||||| Sbjct: 84 agaagctgaaatggaacagc 65
>gb|BT012807.1| Lycopersicon esculentum clone 113827R, mRNA sequence Length = 978 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 atggaacagcagcatagatg 126 |||||||||||||||||||| Sbjct: 748 atggaacagcagcatagatg 767
>emb|AL589872.9| Human DNA sequence from clone RP11-161N3 on chromosome X Contains the 5' end of the gene for a novel protein similar to PHD finger protein 2 PHF2, the 3' end of a novel gene, a ribosomal protein L37 (RPL37) pseudogene and three CpG islands, complete sequence Length = 113964 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tacaattgttcttttccacc 78 |||||||||||||||||||| Sbjct: 20735 tacaattgttcttttccacc 20754
>emb|AL390204.11| Human DNA sequence from clone RP11-196D4 on chromosome 1 Contains the 5' end of the KCNN3 gene for potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, complete sequence Length = 89566 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gtctcagtttttaaccaaaa 217 |||||||||||||||||||| Sbjct: 70763 gtctcagtttttaaccaaaa 70782
>emb|AL138814.13| Human DNA sequence from clone RP11-10M21 on chromosome 13 Contains the 5' end of a novel gene, complete sequence Length = 114290 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 aaaagaacccttacaaaaca 233 |||||||||||||||||||| Sbjct: 86796 aaaagaacccttacaaaaca 86777
>emb|AL137847.12| Human DNA sequence from clone RP11-439K3 on chromosome 9q22.2-31.1 Contains two novel genes, the 3' end of a novel gene (MGC20553) and a CpG island, complete sequence Length = 143372 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agcttcaaagaagctgaaat 108 |||||||||||||||||||| Sbjct: 128041 agcttcaaagaagctgaaat 128060
>gb|AY884588.1| Neogobius cephalarges haplotype A cytochrome b gene, partial cds; mitochondrial Length = 451 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 aaaaataatcctgtgacaat 355 |||||||||||||||||||| Sbjct: 143 aaaaataatcctgtgacaat 124
>emb|BX571850.7| Zebrafish DNA sequence from clone DKEY-259L18 in linkage group 23, complete sequence Length = 236136 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 aatgcaaaacaatgcaaatg 263 |||||||||||||||||||| Sbjct: 109779 aatgcaaaacaatgcaaatg 109798
>gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191134 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 atgtcccacatggtgaagtt 317 |||||||||||||||||||| Sbjct: 99991 atgtcccacatggtgaagtt 100010
>gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-activated potassium channel (KCNN3) gene, complete cds Length = 163217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gtctcagtttttaaccaaaa 217 |||||||||||||||||||| Sbjct: 15985 gtctcagtttttaaccaaaa 15966
>gb|AC021198.2|F14D7 Sequence of BAC F14D7 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81513 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 agaagctgaaatggaacagc 116 |||||||||||||||||||| Sbjct: 1636 agaagctgaaatggaacagc 1617
>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07 Length = 146008 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gggatgaatgcaaaacaatg 257 |||||||||||||||||||| Sbjct: 72645 gggatgaatgcaaaacaatg 72626 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,842,568 Number of Sequences: 3902068 Number of extensions: 3842568 Number of successful extensions: 71261 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70619 Number of HSP's gapped (non-prelim): 642 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)