ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05c05 |
|---|---|
| Clone Library Name | barley_pub |
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 33.5 bits (75), Expect = 0.25 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = -3 Query: 404 QQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPSHQMW 258 Q QY YP + Q++ + HP P S SS N S S+ W Sbjct: 8 QMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGW 56
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 33.5 bits (75), Expect = 0.25 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = -3 Query: 404 QQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPSHQMW 258 Q QY YP + Q++ + HP P S SS N S S+ W Sbjct: 8 QMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGW 56
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 33.1 bits (74), Expect = 0.33 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Frame = -3 Query: 449 YGFQGQSTQGGFREVQQPSQY---GGLGYPSFYQSQNGMQQEHP---QNPAEGSLNSSQN 288 Y GQS G+ P Y GG G QS G Q +P Q PA S + S Sbjct: 55 YSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYG 114 Query: 287 APSQPS 270 + SQ S Sbjct: 115 SSSQSS 120
>ZEN_DROSU (Q24648) Protein zerknuellt| Length = 373 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 344 MQQEHPQNPAEGSLNSSQNAPSQPSHQM 261 +QQ H Q+ + L+S +N PSQPS M Sbjct: 56 LQQHHHQHHQQQQLSSDENLPSQPSQDM 83
>YCT9_YEAST (P25629) Hypothetical 16.0 kDa protein in ARE1-THR4 intergenic| region Length = 148 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +2 Query: 242 LSSCAATSGVMAETGHSGSCSSFPRQGSAGA-PVAYHSATGRSSDTQDHRIERAV 403 L C + A TG+S SCS FP SA +TG +SD D R E ++ Sbjct: 35 LFRCERYFCMWASTGYSSSCSCFPATRSASVDSTPSVDSTGSTSDVVDDRGETSM 89
>SSB_BIFLO (Q8G757) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 218 Score = 30.8 bits (68), Expect = 1.6 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = -3 Query: 446 GFQGQSTQGGFREVQQPSQ-YGGLGYPSFYQ-SQNGMQQEHPQNPAEGSLNSSQNA-PSQ 276 GFQG+S GGF+ QQP+Q YG G Y Q G + A S S+ A PS Sbjct: 126 GFQGRS--GGFQGGQQPNQGYGNQGGQGGYAGGQGGYNGGYQGGGAGYSQQSAAPANPSA 183 Query: 275 PSHQMWQHS 249 P+ W ++ Sbjct: 184 PAVDPWSNA 192
>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic| region Length = 738 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Frame = -3 Query: 392 QYGGLG-YP--------SFYQSQNGMQQEHP-QNPAEGSLNSSQNAPSQPSHQMWQ 255 QYG G YP ++YQ+QNG +Q+ P Q A+ S +S Q Q Q Q Sbjct: 617 QYGVAGQYPYQLPKNNYNYYQTQNGQEQQSPNQGVAQHSEDSQQKQSQQQQQQQPQ 672
>KCNH8_MOUSE (P59111) Potassium voltage-gated channel subfamily H member 8| (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) (ELK3) (Fragment) Length = 876 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 371 PSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPSH 267 PS S + H QNPA+ L+ S N PSH Sbjct: 732 PSLVGSSPQRTEAHEQNPADSELHHSPNLDYSPSH 766
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 359 QSQNGMQQEHPQNPAEGSLNSSQNAPSQPSHQMWQHSY 246 Q+Q+ QQ+ PQ PA +L+ P S Q Q +Y Sbjct: 555 QAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAY 592 Score = 28.9 bits (63), Expect = 6.2 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = -3 Query: 440 QGQSTQGGFREVQQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQN-----APSQ 276 Q QS+Q + QQPSQ P+ Y SQ Q+HPQ+ S +Q+ P Q Sbjct: 510 QLQSSQPPYS--QQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQ 567 Query: 275 PS 270 P+ Sbjct: 568 PA 569
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 29.6 bits (65), Expect = 3.6 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Frame = -3 Query: 437 GQSTQGGFREVQQPSQYGGLGYPSFY-----QSQNGMQQEHPQNPAEGSLNSSQNAPSQP 273 GQ QG Q Q G G P +Y QS G Q Q P +G +P QP Sbjct: 477 GQGQQGQQPGQGQQGQQPGQGQPGYYPTSPQQSGQGQQPGQWQQPGQGQPGYYPTSPLQP 536
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 29.6 bits (65), Expect = 3.6 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Frame = -3 Query: 437 GQSTQGGFREVQQPSQYGGLGYPSFY-----QSQNGMQQEHPQNPAEGSLNSSQNAPSQP 273 GQ QG Q Q G G P +Y QS G Q Q P +G +P QP Sbjct: 472 GQGQQGQQPGQGQQGQQPGQGQPGYYPTSPQQSGQGQQPGQWQQPGQGQPGYYPTSPLQP 531
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 29.6 bits (65), Expect = 3.6 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = -3 Query: 437 GQSTQGGF-REVQQPSQYGGLGYPSFYQSQNGMQQEHP---QNPAEGSLNSSQNAPSQP 273 GQ QG + +QQP Q G G P Q Q Q +HP Q P +G +P QP Sbjct: 457 GQGQQGHYPASLQQPGQ--GQGQPG--QRQQPGQGQHPEQGQQPGQGQQGYYPTSPQQP 511
>CAPP_XANCP (Q8P336) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 904 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 447 RLPGPEHAGWFPRGATALSIRWSWVSELL 361 RL GP HA +FPR L++ WV LL Sbjct: 810 RLAGPLHARFFPRIRDELALTKHWVKTLL 838
>SGBU_ECOLI (P37679) Putative L-ribulose-5-phosphate 3-epimerase sgbU (EC| 5.1.3.22) (L-xylulose-5-phosphate 3-epimerase) Length = 286 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = -1 Query: 262 CGSTATKM*VCASVEEASSRLSAYPWHASYEADELSCLLERQEGEVDVLVSKYVGFPF 89 CG +M SV+E RLS W A+ ++ ++E G + +S + FPF Sbjct: 29 CGFDFVEM----SVDETDERLSRLDWSAAQRTSLVAAMIETGVGIPSMCLSAHRRFPF 82
>ERF2_CANAL (O13354) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 715 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 440 QGQSTQGGFREVQQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEG 309 Q + +GG++ Q QYGG YQ N Q+ Q ++G Sbjct: 92 QNYNNRGGYQGYNQNQQYGG------YQQYNSQPQQQQQQQSQG 129
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Frame = -3 Query: 440 QGQSTQGGFREVQQPSQYGGLGYPSFYQSQNGMQQEHPQ---------NPAEGSLNSSQN 288 QGQ GG R+ Q+ Q G G + G PQ P GS +Q Sbjct: 240 QGQGRPGGQRDGQRDGQRDGQGNRGGQRQGAGAGGPRPQGGPRPQGGSRPQGGSAQGAQG 299 Query: 287 APSQ 276 APSQ Sbjct: 300 APSQ 303
>FST_RAT (P21674) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSSFPRQ 319 +++ + A +SGV+ E HSGSC+S + Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNSISEE 322
>FST_MOUSE (P47931) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSSFPRQ 319 +++ + A +SGV+ E HSGSC+S + Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNSISEE 322
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/63 (25%), Positives = 26/63 (41%) Frame = -3 Query: 440 QGQSTQGGFREVQQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPSHQM 261 Q Q Q +++QQ + + + Q Q+ QQ+ Q + + Q Q HQ Sbjct: 161 QMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQQQQQQQQHQQQHHQQQQQQQQQHHQQ 220 Query: 260 WQH 252 QH Sbjct: 221 QQH 223
>ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC 3.4.22.16)| Length = 358 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 278 ETGHSGSCSSFPRQGSAGAPVAYHSATGRSSDTQDHRI 391 E GH GSC +F G+ A AYH A G+ + ++ Sbjct: 158 EQGHCGSCWTFSTTGALEA--AYHQAFGKGISLSEQQL 193
>YAF2_HUMAN (Q8IY57) YY1-associated factor 2| Length = 180 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 323 SAGAPVAYHSATGRSSDTQDHRIERAVAPRGNHPACSG 436 S+ A HS +G SSD + + R+ +PRG + +G Sbjct: 140 SSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNG 177
>SEN54_NEUCR (Q7SC91) Probable tRNA-splicing endonuclease subunit sen-54| (tRNA-intron endonuclease sen-54) Length = 566 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 398 PSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQP 273 P YG L P FY+S N + P+ S ++S A +QP Sbjct: 344 PPPYGPLVPPGFYRSYNTIYNYLSLRPSSTSSSASPTADNQP 385
>VMSA_HBVAR (P31869) Major surface antigen| Length = 226 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -2 Query: 393 SIRWSWVSELLPVAEWYATGAP 328 S+R+SW+S L+P +W+A +P Sbjct: 167 SVRFSWLSLLVPFVQWFAGLSP 188
>VMSA_HBVAD (P31868) Major surface antigen| Length = 226 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -2 Query: 393 SIRWSWVSELLPVAEWYATGAP 328 S+R+SW+S L+P +W+A +P Sbjct: 167 SVRFSWLSLLVPFVQWFAGLSP 188
>AZF1_YEAST (P41696) Asparagine-rich zinc finger protein AZF1| Length = 914 Score = 28.9 bits (63), Expect = 6.2 Identities = 25/55 (45%), Positives = 25/55 (45%) Frame = -3 Query: 428 TQGGFREVQQPSQYGGLGYPSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPSHQ 264 TQ G E Q S G G QN QEH Q P LN SQ A SQP HQ Sbjct: 12 TQAGQNESQNQSS-GEAG------EQN---QEHGQGPTP-ILNQSQPASSQPQHQ 55
>FST_PIG (P10669) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSS 307 +++ + A +SGV+ E HSGSC+S Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNS 318
>FST_HUMAN (P19883) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSS 307 +++ + A +SGV+ E HSGSC+S Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNS 318
>FST_HORSE (O62650) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSS 307 +++ + A +SGV+ E HSGSC+S Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNS 318
>FST_BOVIN (P50291) Follistatin precursor (FS) (Activin-binding protein)| Length = 344 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSS 307 +++ + A +SGV+ E HSGSC+S Sbjct: 292 ASECAMKEAACSSGVLLEVKHSGSCNS 318
>MPRB_PIG (Q865K9) Membrane progestin receptor beta (mPR beta) (Progestin and| adipoQ receptor family member VIII) Length = 354 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +1 Query: 289 FWELFKLPSAGFCGCSCCIPFCDW*KLGYPRP 384 FW LF LP+A FCG C C + K Y RP Sbjct: 175 FW-LFFLPAAAFCGWLSCTGCC-YAKYRYRRP 204
>MPRB_HUMAN (Q8TEZ7) Membrane progestin receptor beta (mPR beta) (Progestin and| adipoQ receptor family member VIII) (Lysosomal membrane protein in brain-1) Length = 354 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +1 Query: 289 FWELFKLPSAGFCGCSCCIPFCDW*KLGYPRP 384 FW LF LP+A FCG C C + K Y RP Sbjct: 175 FW-LFFLPAAAFCGWLSCAGCC-YAKYRYRRP 204
>MREC_ECOLI (P16926) Rod shape-determining protein mreC| Length = 367 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 371 PSFYQSQNGMQQEHPQNPAEGSLNSSQNAPSQPS 270 P + G+ Q PQ PA G+ ++ AP+QP+ Sbjct: 309 PKLPEPATGIAQPTPQQPATGNAATAPAAPTQPA 342
>FST_SHEEP (P31514) Follistatin precursor (FS) (Activin-binding protein)| (Fragment) Length = 337 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 227 STDLHLSSCAATSGVMAETGHSGSCSS 307 +++ + A +SGV+ E HSGSC+S Sbjct: 285 ASECAMKEAACSSGVLLEVKHSGSCNS 311 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,979,634 Number of Sequences: 219361 Number of extensions: 1236845 Number of successful extensions: 4369 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4343 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
