ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192506.1| Oryza sativa (japonica cultivar-group), predic... 131 2e-27
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
3dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
4dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AK102816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
6dbj|AK062567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
7emb|AJ575235.1|OSA575235 Oryza sativa (japonica cultivar-group) ... 123 5e-25
8gb|BT016498.1| Zea mays clone Contig331 mRNA sequence 121 2e-24
9gb|AY108470.1| Zea mays PCO113322 mRNA sequence 121 2e-24
10gb|BT019162.1| Zea mays clone Contig827.F mRNA sequence 107 3e-20
11gb|BT018717.1| Zea mays clone EL01N0517H09.d mRNA sequence 100 8e-18
12gb|AY108526.1| Zea mays PCO113325 mRNA sequence 86 1e-13
13gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.098
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
15dbj|AK120605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.098
16dbj|AK066026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.098
17gb|AC147679.13| Canis Familiaris, clone XX-10F3, complete sequence 44 0.39
18emb|AJ634076.1| Silene bergiana partial rpb2 gene for RNA polyme... 42 1.5
19dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
20gb|AY107024.1| Zea mays PCO127729 mRNA sequence 42 1.5
21gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 40 6.1
22gb|AC063952.15| Homo sapiens 3 BAC RP11-174O3 (Roswell Park Canc... 40 6.1
23gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's H... 40 6.1
24emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 6.1
25gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.1
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.1
27emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 ... 40 6.1
28gb|AC140770.1| Homo sapiens chromosome 5 clone RP11-78J4, comple... 40 6.1
29emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in ... 40 6.1
30gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Canc... 40 6.1 
>ref|NM_192506.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1488

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
            ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 1486 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 1427

                                                                        
Query: 305  agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
            || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 1426 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 1367

                                                                      
Query: 365  agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
            |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 1366 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 1309
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Plus

                                                                            
Query: 245      agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
                ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 27095729 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 27095788

                                                                            
Query: 305      agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
                || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 27095789 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 27095848

                                                                          
Query: 365      agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
                |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 27095849 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 27095906
to top
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0671D01
          Length = 163006

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Plus

                                                                          
Query: 245    agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
              ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 154560 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 154619

                                                                          
Query: 305    agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
              || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 154620 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 154679

                                                                        
Query: 365    agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
              |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 154680 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 154737
to top
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0003E08
          Length = 135014

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Plus

                                                                        
Query: 245  agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
            ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 3407 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 3466

                                                                        
Query: 305  agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
            || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 3467 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 3526

                                                                      
Query: 365  agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
            |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 3527 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 3584
to top
>dbj|AK102816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108M16, full
            insert sequence
          Length = 3073

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
            ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 2760 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 2701

                                                                        
Query: 305  agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
            || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 2700 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 2641

                                                                      
Query: 365  agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
            |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 2640 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 2583
to top
>dbj|AK062567.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H10, full
            insert sequence
          Length = 1490

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 245  agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
            ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 1207 agtagatgtgttgccagatctggtgcgatggctgagatggagtgatctgagagctgttca 1148

                                                                        
Query: 305  agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
            || ||||||| | | |||||||||||||||||||  | | ||||  ||| ||||||||||
Sbjct: 1147 aggttccctcagtaaggttctgcgggtgctcctgcggtaaaccagcctgtgactggtaga 1088

                                                                      
Query: 365  agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
            |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 1087 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 1030
to top
>emb|AJ575235.1|OSA575235 Oryza sativa (japonica cultivar-group) partial mRNA for TA9 protein
          Length = 423

 Score =  123 bits (62), Expect = 5e-25
 Identities = 149/178 (83%)
 Strand = Plus / Minus

                                                                       
Query: 245 agtagctgtgctgccacatctggtgtgatggctgagacggggcattctgggagctgttca 304
           ||||| |||| ||||| |||||||| ||||||||||| || |   |||| ||||||||||
Sbjct: 421 agtagatgtgttgccagatctggtgcgatggctgagatggagtggtctgagagctgttca 362

                                                                       
Query: 305 agcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgactggtaga 364
           || ||||||| | | |||||||||||||||| ||  | | ||||  ||| ||||||||||
Sbjct: 361 aggttccctcagtaaggttctgcgggtgctcatgcggtaaaccagcctgtgactggtaga 302

                                                                     
Query: 365 agctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaaccacc 422
           |||| || |||||||| |||||||||||||||||||| ||| ||| |||||| |||||
Sbjct: 301 agcttgggtacccaaggccaccgtattgagagggctgctgcccctggcggaagccacc 244
to top
>gb|BT016498.1| Zea mays clone Contig331 mRNA sequence
          Length = 1559

 Score =  121 bits (61), Expect = 2e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                        
Query: 299  tgttcaagcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgact 358
            |||||||||||||||| |  |||||||| |||||||||||| ||| ||   |||||||||
Sbjct: 1223 tgttcaagcttccctcagtggggttctgggggtgctcctgtggcagactggtctgcgact 1164

                                                                        
Query: 359  ggtagaagctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaac 418
            |||||||||| |||||||||||||||||||| ||||| ||||| ||  ||| |||||| |
Sbjct: 1163 ggtagaagcttggatacccaagaccaccgtactgagatggctgatgtgcctggcggaagc 1104

                                     
Query: 419  caccctgcgtgctctggccctggaa 443
            |||| |||   ||||||||||||||
Sbjct: 1103 caccatgctgactctggccctggaa 1079
to top
>gb|AY108470.1| Zea mays PCO113322 mRNA sequence
          Length = 555

 Score =  121 bits (61), Expect = 2e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                       
Query: 299 tgttcaagcttccctcggcagggttctgcgggtgctcctgttgcataccattctgcgact 358
           |||||||||||||||| |  |||||||| |||||||||||| ||| ||   |||||||||
Sbjct: 265 tgttcaagcttccctcagtggggttctgggggtgctcctgtggcagactggtctgcgact 206

                                                                       
Query: 359 ggtagaagctcggatacccaagaccaccgtattgagagggctgttgcacctcgcggaaac 418
           |||||||||| |||||||||||||||||||| ||||| ||||| ||  ||| |||||| |
Sbjct: 205 ggtagaagcttggatacccaagaccaccgtactgagatggctgatgtgcctggcggaagc 146

                                    
Query: 419 caccctgcgtgctctggccctggaa 443
           |||| |||   ||||||||||||||
Sbjct: 145 caccatgctgactctggccctggaa 121
to top
>gb|BT019162.1| Zea mays clone Contig827.F mRNA sequence
          Length = 1010

 Score =  107 bits (54), Expect = 3e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 351 ctgcgactggtagaagctcggatacccaagaccaccgtattgagagggctgttgcacctc 410
           |||||||||||||||||| || ||||||||||||||||||||||||||||| ||  ||| 
Sbjct: 510 ctgcgactggtagaagcttgggtacccaagaccaccgtattgagagggctgatgtgcctg 451

                                         
Query: 411 gcggaaaccaccctgcgtgctctggccctg 440
           |||||| |||||||||  ||||||||||||
Sbjct: 450 gcggaagccaccctgctggctctggccctg 421
to top
>gb|BT018717.1| Zea mays clone EL01N0517H09.d mRNA sequence
          Length = 2024

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 351  ctgcgactggtagaagctcggatacccaagaccaccgtattgagagggctgttgcacctc 410
            |||||||||||||||||| || ||||||||||||||||||||||||||||| ||  ||| 
Sbjct: 1599 ctgcgactggtagaagcttgggtacccaagaccaccgtattgagagggctgatgtgcctg 1540

                                          
Query: 411  gcggaaaccaccctgcgtgctctggccctg 440
            || ||| |||||||||  ||||||||||||
Sbjct: 1539 gcagaagccaccctgctggctctggccctg 1510
to top
>gb|AY108526.1| Zea mays PCO113325 mRNA sequence
          Length = 1161

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/90 (87%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 351  ctgcgactggtagaagctcggatacccaagaccaccgtattgagagggctgttgcacctc 410
            ||||||||| |||||||| || ||||||||||||||||||||||||||||| ||  ||| 
Sbjct: 1149 ctgcgactg-tagaagcttgggtacccaagaccaccgtattgagagggctgatgtgcctg 1091

                                          
Query: 411  gcggaaaccaccctgcgtgctctggccctg 440
            |||||| ||||| |||  ||||||||||||
Sbjct: 1090 gcggaagccaccntgctggctctggccctg 1061
to top
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                         
Query: 253   tgctgccacatctggtgtgatggctgagacggggcattctgggagctgttcaagcttccc 312
             |||||||||  |||||| || ||||| ||  ||||||||||| | | ||||| || ||||
Sbjct: 87242 tgctgccacccctggtgagacggctgtgattgggcattctggaaaccgttcaggcctccc 87183

                                    
Query: 313   tcggcagggttctgcgggtgctc 335
             ||||| ||||||||  |||||||
Sbjct: 87182 tcggccgggttctggtggtgctc 87160
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                            
Query: 253      tgctgccacatctggtgtgatggctgagacggggcattctgggagctgttcaagcttccc 312
                |||||||||  |||||| || ||||| ||  ||||||||||| | | ||||| || ||||
Sbjct: 28007077 tgctgccacccctggtgagacggctgtgattgggcattctggaaaccgttcaggcctccc 28007018

                                       
Query: 313      tcggcagggttctgcgggtgctc 335
                ||||| ||||||||  |||||||
Sbjct: 28007017 tcggccgggttctggtggtgctc 28006995
to top
>dbj|AK120605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150C07, full
            insert sequence
          Length = 4157

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 253  tgctgccacatctggtgtgatggctgagacggggcattctgggagctgttcaagcttccc 312
            |||||||||  |||||| || ||||| ||  ||||||||||| | | ||||| || ||||
Sbjct: 2760 tgctgccacccctggtgagacggctgtgattgggcattctggaaaccgttcaggcctccc 2701

                                   
Query: 313  tcggcagggttctgcgggtgctc 335
            ||||| ||||||||  |||||||
Sbjct: 2700 tcggccgggttctggtggtgctc 2678
to top
>dbj|AK066026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044F07, full
            insert sequence
          Length = 3108

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 253  tgctgccacatctggtgtgatggctgagacggggcattctgggagctgttcaagcttccc 312
            |||||||||  |||||| || ||||| ||  ||||||||||| | | ||||| || ||||
Sbjct: 2756 tgctgccacccctggtgagacggctgtgattgggcattctggaaaccgttcaggcctccc 2697

                                   
Query: 313  tcggcagggttctgcgggtgctc 335
            ||||| ||||||||  |||||||
Sbjct: 2696 tcggccgggttctggtggtgctc 2674
to top
>gb|AC147679.13| Canis Familiaris, clone XX-10F3, complete sequence
          Length = 193944

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 425   gcgtgctctggccctggaagcc 446
             ||||||||||||||||||||||
Sbjct: 66166 gcgtgctctggccctggaagcc 66145
to top
>emb|AJ634076.1| Silene bergiana partial rpb2 gene for RNA polymerase II, exons
           23-24, specimen_voucher Holmdahl 1182
          Length = 631

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 72  agaaagaagaggggggaaaagggaa 96
           ||||||||||||||| |||||||||
Sbjct: 149 agaaagaagagggggtaaaagggaa 125
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 399     ctgttgcacctcgcggaaacc 419
               |||||||||||||||||||||
Sbjct: 3678138 ctgttgcacctcgcggaaacc 3678158
to top
>gb|AY107024.1| Zea mays PCO127729 mRNA sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 271 gatggctgagacggggcattctgggagctgttcaagcttccctcggcagggttctgcggg 330
           |||||||||||||| |    |||| ||| ||||| ||| ||||| ||| ||||||| |||
Sbjct: 251 gatggctgagacggtgtgacctggaagccgttcaggctgccctcagcaaggttctggggg 192

                    
Query: 331 tgctcctgt 339
           |||||||||
Sbjct: 191 tgctcctgt 183
to top
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   agaagctcggatacccaaga 381
             ||||||||||||||||||||
Sbjct: 83585 agaagctcggatacccaaga 83604
to top
>gb|AC063952.15| Homo sapiens 3 BAC RP11-174O3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152024

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    catctggtgtgatggctgag 280
              ||||||||||||||||||||
Sbjct: 101328 catctggtgtgatggctgag 101309
to top
>gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 234684

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     cagaaagaagaggggggaaa 90
              ||||||||||||||||||||
Sbjct: 111022 cagaaagaagaggggggaaa 111041
to top
>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
             complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    agaggggggaaaagggaaaa 98
             ||||||||||||||||||||
Sbjct: 25636 agaggggggaaaagggaaaa 25655
to top
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    attctgcgactggtagaagc 367
              ||||||||||||||||||||
Sbjct: 447398 attctgcgactggtagaagc 447417
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 431     tctggccctggaagccgtaa 450
               ||||||||||||||||||||
Sbjct: 5094067 tctggccctggaagccgtaa 5094048
to top
>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
             complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   agacctacatcttagtagct 251
             ||||||||||||||||||||
Sbjct: 77172 agacctacatcttagtagct 77191
to top
>gb|AC140770.1| Homo sapiens chromosome 5 clone RP11-78J4, complete sequence
          Length = 156513

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    gaaagaagaggggggaaaagggaa 96
             |||||||||||||||| |||||||
Sbjct: 68052 gaaagaagaggggggagaagggaa 68075
to top
>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
              complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    agacctacatcttagtagct 251
              ||||||||||||||||||||
Sbjct: 120143 agacctacatcttagtagct 120162
to top
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119034

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    aagaggggggaaaagggaaa 97
             ||||||||||||||||||||
Sbjct: 80213 aagaggggggaaaagggaaa 80194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,157,501
Number of Sequences: 3902068
Number of extensions: 3157501
Number of successful extensions: 60816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60701
Number of HSP's gapped (non-prelim): 101
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top