ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YNE2_YEAST (P53958) Hypothetical 43.7 kDa protein in YIP3-TFC5 i... 31 0.74
2PIK1_YEAST (P39104) Phosphatidylinositol 4-kinase PIK1 (EC 2.7.1... 30 2.2

>YNE2_YEAST (P53958) Hypothetical 43.7 kDa protein in YIP3-TFC5 intergenic|
           region
          Length = 396

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 15  RLQASINFTEQRIHFWIRNSSLVVSSSPHVTDGNQPTR*SDNDEGLKSSSELPDVAGA 188
           +L +S      +IH        V +SSP    GNQP    +N EG +SS  LP + G+
Sbjct: 77  KLASSSGLPINQIHKLFNTDHGVPASSPMKAGGNQP---HNNTEGTQSSENLPRLNGS 131



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>PIK1_YEAST (P39104) Phosphatidylinositol 4-kinase PIK1 (EC 2.7.1.67)|
           (PI4-kinase) (PtdIns-4-kinase)
          Length = 1066

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 30  INFTEQRIHFWIRNSSLVVSSSPH--VTDGNQPTR*SDNDEGLKSSSELPDVAGAHLADD 203
           +N+  ++ +   RN S + S++    V D N     +  +EGL S+S     + AH+  +
Sbjct: 555 LNYMNRKENNENRNESTLTSNNTRSSVYDSNSFNNGASRNEGLSSTSRSDSASTAHVRTE 614

Query: 204 LGRERARGGMVLL 242
           + +E   G M ++
Sbjct: 615 VNKEEDLGDMSMV 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,409,998
Number of Sequences: 219361
Number of extensions: 479140
Number of successful extensions: 1195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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