ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05c03 |
|---|---|
| Clone Library Name | barley_pub |
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.4 bits (106), Expect = 7e-05 Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -1 Query: 465 KQEAQNALQALA-STHLYGRHLVIERAKEGETLEELRARTAAQF 337 KQ+A+ A AL STHLYGR LV+E A TL+ LR +TAA F Sbjct: 884 KQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAAHF 927
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -1 Query: 465 KQEAQNALQALA-STHLYGRHLVIERAKEGETLEELRARTAAQF 337 KQ+A+ A AL STHLYGR LV+E A T++ LR +TA F Sbjct: 876 KQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHF 919
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 38.5 bits (88), Expect = 0.009 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = -1 Query: 459 EAQNALQALASTHLYGRHLVIERAKEGETLE 367 EA A++AL THL GRHLV++ A EGE ++ Sbjct: 698 EAARAMEALKHTHLLGRHLVLQWANEGEEVD 728
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIERAKEGETLEELRARTAAQFVDEQSGFQ 313 +EA+NA+ AL +THL GR LV+E A E E + A Q ++++ G Q Sbjct: 748 REAENAMDALKNTHLLGRRLVLEFANE----EAIDAEEEIQRIEKKVGEQ 793
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIE----RAKEGETLEELRARTAAQFVDEQSGFQR 310 +EAQ+A++AL THL GRHLV++ + + ++ R++T FV+ R Sbjct: 770 REAQSAMEALKHTHLLGRHLVLQWSHLASSTQQQVDMQRSKTKQHFVNTHDNAAR 824
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 36.2 bits (82), Expect = 0.043 Identities = 20/46 (43%), Positives = 26/46 (56%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIERAKEGETLEELRARTAAQFVDEQ 325 +EA+NA+ AL +THL GR LV+E A E E + V EQ Sbjct: 753 REAENAMDALKNTHLLGRRLVLEFANEEAVDPEQEIEQIEKKVGEQ 798
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 35.8 bits (81), Expect = 0.056 Identities = 16/35 (45%), Positives = 27/35 (77%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIERAKEGETLEELR 358 +EA NA++AL +THL GRHLV++ A T+++++ Sbjct: 772 REAANAMRALKNTHLLGRHLVLQYASNA-TMDDMQ 805
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 32.0 bits (71), Expect = 0.81 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIERAKEG-----ETLEELRARTAAQFVDEQSGFQRMST* 298 +EA+NA+ L HL GR LV++ A+E E + + + Q + R Sbjct: 814 KEAENAMDQLHGVHLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRNGGG 873 Query: 297 RKQTSLVDEGSVKF 256 RK+ + DE + F Sbjct: 874 RKKLDVDDEENEGF 887
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVI-----ERAKEGETLEELRARTAAQFVDEQSGFQRMST* 298 +EA+NA+ L HL GR LV+ E A E LE + + Q + + Sbjct: 789 KEAENAMDQLQGVHLLGRRLVMQPAEQEAANAEEELERMTKKVRKQAAVSEIAAMTRNAG 848 Query: 297 RKQTSLVDE 271 +++ + DE Sbjct: 849 KRKLDMEDE 857
>TGAS_STRMB (P81453) Protein-glutamine gamma-glutamyltransferase precursor (EC| 2.3.2.13) (Transglutaminase) (TGase) (MTG) Length = 407 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 393 RAKEGETLEELRARTAAQFVDEQSGFQR 310 R + GET E R A + DE+ GFQR Sbjct: 174 RPRSGETRAEFEGRVAKESFDEEKGFQR 201
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 459 EAQNALQALASTHLYGRHLVIERA-KEGETLEE 364 EA+NA+ L HL GR LV++ A +E + +EE Sbjct: 764 EAENAMDQLQGVHLLGRRLVMQYAEQESDDVEE 796
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 8 CGINVPSTGSFSL---LVNCILRITVFHFPHTSCCSFFSPALTQKYKR 142 CG++VP +G++SL VN + T + FPH S S + T R Sbjct: 352 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMTAR 399
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 8 CGINVPSTGSFSL---LVNCILRITVFHFPHTSCCSFFSPALTQKYKR 142 CG++VP +G++SL VN + T + FPH S S + T R Sbjct: 378 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQSSTSMSAR 425
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +2 Query: 8 CGINVPSTGSFSL---LVNCILRITVFHFPHTSCCSFFSPALTQKYKR 142 CG++VP +G++SL VN + T + FPH S S T R Sbjct: 381 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQTSTSMSAR 428
>SCOB_XANCP (O34263) Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B| (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B) Length = 213 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -1 Query: 405 LVIERAKEGETLEELRARTAAQFVDEQSG 319 LV+ A EG LEELRA+T FV + G Sbjct: 185 LVLVEAAEGVGLEELRAKTGVAFVVQTRG 213
>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 481 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +2 Query: 8 CGINVPSTGSFSL---LVNCILRITVFHFPHTSCCSFFSPALTQKYKR 142 CG++VP +G++SL VN + T + FPH S S T R Sbjct: 382 CGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVPHPSMTSQTSTSMSAR 429
>NU155_RAT (P37199) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)| (155 kDa nucleoporin) (P140) Length = 1390 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 13 HQCAFNWIIFTSCKLHS*DHCISFSTHELLQFLFSSTNPKIQEKIEEAR 159 +Q W K++ +SF LLQF FS +P +Q +I+ +R Sbjct: 239 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEIDNSR 287
>NU155_MOUSE (Q99P88) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)| (155 kDa nucleoporin) Length = 1391 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 13 HQCAFNWIIFTSCKLHS*DHCISFSTHELLQFLFSSTNPKIQEKIEEAR 159 +Q W K++ +SF LLQF FS +P +Q +I+ +R Sbjct: 240 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEIDNSR 288
>TRME_TREPA (O83561) Probable tRNA modification GTPase trmE| Length = 495 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 386 KRERRLKNCEQEPPLSLWTNRVVSSGCPRRGNRQVW 279 +R RRL+ C QE L R+V GCP G ++ Sbjct: 205 ERLRRLRACWQERALQRTGVRIVLGGCPNAGKSSLF 240
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIERAK 385 +EA NA +L TH+ GR LVI+ A+ Sbjct: 755 KEALNAFNSLKDTHILGRRLVIDFAQ 780
>RECO_NEIMB (Q9K0W0) DNA repair protein recO (Recombination protein O)| Length = 263 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1 Query: 456 AQNALQALASTHLYGRHLVIERAKEGETLEELR 358 A++ QAL T L+ RHL+ E K + LE++R Sbjct: 208 AESLQQALKITRLFIRHLLPEGLKSRQVLEQIR 240
>RECO_NEIMA (Q9JT15) DNA repair protein recO (Recombination protein O)| Length = 263 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1 Query: 456 AQNALQALASTHLYGRHLVIERAKEGETLEELR 358 A++ QAL T L+ RHL+ E K + LE++R Sbjct: 208 AESLQQALKITRLFIRHLLPEGLKSRQVLEQIR 240
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 462 QEAQNALQALASTHLYGRHLVIE 394 +EA+NA+ L HL GR LV+E Sbjct: 803 KEAENAMDQLQGVHLLGRRLVME 825
>CATA_MYCTU (Q08129) Peroxidase/catalase T (EC 1.11.1.6) (Catalase-peroxidase| T) Length = 740 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%) Frame = -2 Query: 359 EQEPPLSLWTNRVVSSGCP---------RRGNRQVWWTKAL 264 EQ PP++ T S+GCP G Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43
>CATA_MYCBO (P46817) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 740 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%) Frame = -2 Query: 359 EQEPPLSLWTNRVVSSGCP---------RRGNRQVWWTKAL 264 EQ PP++ T S+GCP G Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,613,435 Number of Sequences: 219361 Number of extensions: 1285166 Number of successful extensions: 3000 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2937 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3000 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
