ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473857.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 143 6e-31
4emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 143 6e-31
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
6emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chr... 44 0.40
7ref|XM_574917.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 44 0.40
8emb|CT485605.3| RP43-010N04, complete sequence 44 0.40
9gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
10emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in... 42 1.6
11gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, com... 42 1.6
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
13emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 ... 42 1.6
14gb|AC009471.5| Homo sapiens BAC clone RP11-168K7 from 2, complet... 42 1.6
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
16ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / transc... 40 6.3
17gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 6.3
18gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosom... 40 6.3
19gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosom... 40 6.3
20gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At... 40 6.3
21emb|BX005133.4| Human DNA sequence from clone DASS-103C7 on chro... 40 6.3
22emb|AL732432.3| Human DNA sequence from clone XXbac-92J3 on chro... 40 6.3
23emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chrom... 40 6.3
24emb|AL596106.4| Human DNA sequence from clone RP11-13B15 on chro... 40 6.3
25emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chr... 40 6.3
26emb|AL157881.14| Human DNA sequence from clone RP11-104M22 on ch... 40 6.3
27gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C... 40 6.3
28emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene 40 6.3
29gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP... 40 6.3
30emb|CR759808.2| Human DNA sequence from clone DAMC-143C14 on chr... 40 6.3
31gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 ma... 40 6.3
32gb|AY072387.1| Arabidopsis thaliana putative MYB family transcri... 40 6.3
33gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 40 6.3
34gb|AY070850.1| Drosophila melanogaster GM03205 full length cDNA 40 6.3
35gb|AF102214.1|AF102214 HIV-1 strain SE4349 from Sweden, 5' long ... 40 6.3
36emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Co... 40 6.3
37emb|BX927232.4| Human DNA sequence from clone DAMA-334F21 on chr... 40 6.3
38emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chro... 40 6.3
39gb|AF129395.1|AF129395 HIV-1 isolate 005pf-96(1) from United Kin... 40 6.3
40dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.3
41gb|U34604.1|HIV1U34604 Human immunodeficiency virus HIV-1, clone... 40 6.3
42gb|U34603.1|HIV1U34603 Human immunodeficiency virus HIV-1, clone... 40 6.3
43emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150... 40 6.3
44gb|U72096.1|HIVU72096 HIV-1 clone pMCE31.3 from Canada, 5' long ... 40 6.3
45gb|U72095.1|HIVU72095 HIV-1 clone pMCE31.1 from Canada, 5' long ... 40 6.3
46gb|AY856764.1| HIV-1 isolate 4035 from France nef protein (nef) ... 40 6.3
47dbj|AP004498.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.3
48gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding... 40 6.3
49gb|U26137.1|HIV1U26137 Human immunodeficiency virus type 1 patie... 40 6.3
50emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2... 40 6.3
51emb|AL133223.5|CNS01DU8 Human chromosome 14 DNA sequence BAC R-1... 40 6.3 
>ref|XM_473857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2715

 Score =  194 bits (98), Expect = 2e-46
 Identities = 194/226 (85%)
 Strand = Plus / Minus

                                                                        
Query: 240  attctactacccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 299
            ||||||||| |||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 2713 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 2654

                                                                        
Query: 300  acgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 359
             | |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 2653 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 2594

                                                                        
Query: 360  gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 419
            | ||||||||||| |||||||| || || |||||||| |||||||  ||||| |||||||
Sbjct: 2593 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 2534

                                                          
Query: 420  gatgagtgcttgccagggcttgcagggcgttctgtgcctcttgctt 465
            |||||||||| || || ||||| || |||||||| |||||||||||
Sbjct: 2533 gatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctt 2488
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>dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H01, full
            insert sequence
          Length = 1813

 Score =  194 bits (98), Expect = 2e-46
 Identities = 194/226 (85%)
 Strand = Plus / Minus

                                                                        
Query: 240  attctactacccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 299
            ||||||||| |||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 1610 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 1551

                                                                        
Query: 300  acgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 359
             | |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 1550 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 1491

                                                                        
Query: 360  gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 419
            | ||||||||||| |||||||| || || |||||||| |||||||  ||||| |||||||
Sbjct: 1490 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 1431

                                                          
Query: 420  gatgagtgcttgccagggcttgcagggcgttctgtgcctcttgctt 465
            |||||||||| || || ||||| || |||||||| |||||||||||
Sbjct: 1430 gatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctt 1385
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  143 bits (72), Expect = 6e-31
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                         
Query: 240   attctactacccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 299
             ||||||||| |||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 23711 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 23770

                                                                         
Query: 300   acgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 359
              | |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 23771 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 23830

                                                         
Query: 360   gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 403
             | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 23831 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 23874



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 407   tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgctt 465
             ||||| ||||||||||||||||| || || ||||| || |||||||| |||||||||||
Sbjct: 23975 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctt 24033
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score =  143 bits (72), Expect = 6e-31
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                          
Query: 240    attctactacccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 299
              ||||||||| |||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 139004 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 139063

                                                                          
Query: 300    acgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 359
               | |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 139064 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 139123

                                                          
Query: 360    gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 403
              | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 139124 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 139167



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                         
Query: 407    tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgctt 465
              ||||| ||||||||||||||||| || || ||||| || |||||||| |||||||||||
Sbjct: 139268 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctt 139326
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  143 bits (72), Expect = 6e-31
 Identities = 141/164 (85%)
 Strand = Plus / Plus

                                                                            
Query: 240      attctactacccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 299
                ||||||||| |||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 31041631 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 31041690

                                                                            
Query: 300      acgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 359
                 | |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 31041691 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 31041750

                                                            
Query: 360      gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 403
                | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 31041751 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 31041794



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 407      tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgctt 465
                ||||| ||||||||||||||||| || || ||||| || |||||||| |||||||||||
Sbjct: 31041895 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctt 31041953
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>emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chromosome X Contains a
              novel gene (MGC34831) and the 5' end of a novel gene(
              FLJ36601), complete sequence
          Length = 187386

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 131    aaatacaagagaagatagaaga 152
              ||||||||||||||||||||||
Sbjct: 166159 aaatacaagagaagatagaaga 166138
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>ref|XM_574917.1| PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499591), mRNA
          Length = 5148

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 132  aatacaagagaagatagaagag 153
            ||||||||||||||||||||||
Sbjct: 1629 aatacaagagaagatagaagag 1650
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>emb|CT485605.3| RP43-010N04, complete sequence
          Length = 162117

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 131    aaatacaagagaagatagaaga 152
              ||||||||||||||||||||||
Sbjct: 144525 aaatacaagagaagatagaaga 144504
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>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 129    aaaaatacaagagaagatagaagag 153
              ||||||| |||||||||||||||||
Sbjct: 123952 aaaaataaaagagaagatagaagag 123928
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>emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in linkage group 1,
              complete sequence
          Length = 146449

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    atttgttgccttgtattttac 224
              |||||||||||||||||||||
Sbjct: 138860 atttgttgccttgtattttac 138840
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>gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, complete sequence
          Length = 194188

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     atcactgtatttcattttcca 88
              |||||||||||||||||||||
Sbjct: 123495 atcactgtatttcattttcca 123475
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 129      aaaaatacaagagaagatagaagag 153
                ||||||| |||||||||||||||||
Sbjct: 15714271 aaaaataaaagagaagatagaagag 15714247
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>emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 in linkage group 1,
             complete sequence
          Length = 121976

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   atttgttgccttgtattttac 224
             |||||||||||||||||||||
Sbjct: 87022 atttgttgccttgtattttac 87042
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>gb|AC009471.5| Homo sapiens BAC clone RP11-168K7 from 2, complete sequence
          Length = 172445

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 417    agagatgagtgcttgccaggg 437
              |||||||||||||||||||||
Sbjct: 147232 agagatgagtgcttgccaggg 147252
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 129      aaaaatacaagagaagatagaagag 153
                ||||||| |||||||||||||||||
Sbjct: 15801648 aaaaataaaagagaagatagaagag 15801624
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>ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / transcription factor
           AT2G16720 (MYB7) mRNA, complete cds
          Length = 901

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccagacttgtctgtttcctc 298
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     tggacatccgctggaaacca 322
               ||||||||||||||||||||
Sbjct: 3081863 tggacatccgctggaaacca 3081882
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>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence
          Length = 200592

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gttgctgcagtttcttttct 115
              ||||||||||||||||||||
Sbjct: 176518 gttgctgcagtttcttttct 176537
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>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence
          Length = 232468

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gttgctgcagtttcttttct 115
              ||||||||||||||||||||
Sbjct: 166618 gttgctgcagtttcttttct 166599
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>gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At2g16720) mRNA,
           complete cds
          Length = 810

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccagacttgtctgtttcctc 298
           ||||||||||||||||||||
Sbjct: 482 ccagacttgtctgtttcctc 463
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>emb|BX005133.4| Human DNA sequence from clone DASS-103C7 on chromosome 6, complete
             sequence
          Length = 96209

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 39748 cacacgagttgatgcagtttcttt 39771
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>emb|AL732432.3| Human DNA sequence from clone XXbac-92J3 on chromosome 6 contains the
            OR5V1 and OR12D3 genes for olfactory receptor, family 5,
            subfamily V, member 1 and family 12, subfamily D, member
            3, complete sequence
          Length = 52664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 89   cacacgagttgctgcagtttcttt 112
            ||||||||||| ||||||||||||
Sbjct: 9970 cacacgagttgatgcagtttcttt 9993
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>emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chromosome 6 contains the
             OR5U1, OR5V1 and OR12D3 genes for olfactory receptor,
             family 5, subfamily U, member1, subfamily V, member 1 and
             family 12, subfamily D, member 3, the OR2B4P pseudogene
             for olfactory receptor, family 2, subfamily B, member 4
             and a DEAD/H box polypeptide 6 (DDX6) pseudogene, complete
             sequence
          Length = 106642

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 67143 cacacgagttgatgcagtttcttt 67166
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>emb|AL596106.4| Human DNA sequence from clone RP11-13B15 on chromosome 13, complete
             sequence
          Length = 116621

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   tccagcactaacccaaaaat 134
             ||||||||||||||||||||
Sbjct: 62500 tccagcactaacccaaaaat 62481
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>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the
             3' end of the EDG2 gene for endothelial differentiation,
             lysophosphatidic acid G-protein-coupled receptor, 2,
             complete sequence
          Length = 169905

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   aaaatacaagagaagatagaagag 153
             ||||| ||||||||||||||||||
Sbjct: 12474 aaaatgcaagagaagatagaagag 12497
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>emb|AL157881.14| Human DNA sequence from clone RP11-104M22 on chromosome 9q31.1-32
             Contains the 3' end of the MUSK gene for muscle, skeletal,
             receptor tyrosine kinase and the 3' end of the EDG2 gene
             for endothelial differentiation, lysophosphatidic acid
             G-protein-coupled receptor, 2, complete sequence
          Length = 162726

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   aaaatacaagagaagatagaagag 153
             ||||| ||||||||||||||||||
Sbjct: 95850 aaaatgcaagagaagatagaagag 95873
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>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 27473 cacacgagttgatgcagtttcttt 27496
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>emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene
          Length = 2471

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  ccagacttgtctgtttcctc 298
            ||||||||||||||||||||
Sbjct: 1245 ccagacttgtctgtttcctc 1226
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>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gcagtttcttttctccagca 121
             ||||||||||||||||||||
Sbjct: 59853 gcagtttcttttctccagca 59834
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>emb|CR759808.2| Human DNA sequence from clone DAMC-143C14 on chromosome 6, complete
             sequence
          Length = 104964

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 53022 cacacgagttgatgcagtttcttt 53045
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>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
             sequence
          Length = 112792

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ccagacttgtctgtttcctc 298
             ||||||||||||||||||||
Sbjct: 60384 ccagacttgtctgtttcctc 60403
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>gb|AY072387.1| Arabidopsis thaliana putative MYB family transcription factor
           (At2g16720) mRNA, complete cds
          Length = 573

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccagacttgtctgtttcctc 298
           ||||||||||||||||||||
Sbjct: 198 ccagacttgtctgtttcctc 179
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>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     cacacgagttgctgcagtttcttt 112
              ||||||||||| ||||||||||||
Sbjct: 121717 cacacgagttgatgcagtttcttt 121740
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>gb|AY070850.1| Drosophila melanogaster GM03205 full length cDNA
          Length = 3228

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  gtctctccctcttttgctcg 393
            ||||||||||||||||||||
Sbjct: 2942 gtctctccctcttttgctcg 2923
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>gb|AF102214.1|AF102214 HIV-1 strain SE4349 from Sweden, 5' long terminal repeat, partial
           sequence
          Length = 416

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 22  caagagaagatagaagaggc 41
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>emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL89ZH12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 956

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccagacttgtctgtttcctc 298
           ||||||||||||||||||||
Sbjct: 485 ccagacttgtctgtttcctc 466
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>emb|BX927232.4| Human DNA sequence from clone DAMA-334F21 on chromosome 6, complete
             sequence
          Length = 99722

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 50861 cacacgagttgatgcagtttcttt 50884
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>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gcagtttcttttctccagca 121
             ||||||||||||||||||||
Sbjct: 65756 gcagtttcttttctccagca 65737
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>gb|AF129395.1|AF129395 HIV-1 isolate 005pf-96(1) from United Kingdom, nef protein (nef)
           gene, complete cds
          Length = 612

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 439 caagagaagatagaagaggc 458
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>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete
              sequences
          Length = 174548

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     caactggatcattttcactt 46
              ||||||||||||||||||||
Sbjct: 151915 caactggatcattttcactt 151934
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>gb|U34604.1|HIV1U34604 Human immunodeficiency virus HIV-1, clone ACH320.2A.2.1, complete
            genome
          Length = 9631

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  caagagaagatagaagaggc 155
            ||||||||||||||||||||
Sbjct: 9253 caagagaagatagaagaggc 9272



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 159 caagagaagatagaagaggc 178
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>gb|U34603.1|HIV1U34603 Human immunodeficiency virus HIV-1, clone ACH320.2A.1.2, complete
            genome
          Length = 9636

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  caagagaagatagaagaggc 155
            ||||||||||||||||||||
Sbjct: 9258 caagagaagatagaagaggc 9277



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 159 caagagaagatagaagaggc 178
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>emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150A6 on chromosome 6 Contains genes
             OR5U1, OR5V1 and OR12D3 for olfactory receptors 5U1, 5V1
             and 12D3, the 3' end of olfactory receptor 2B4 pseudogene
             OR2B4P, a DDX6 (DEAD/H (Asp-Glu-Ala-Asp/His) box
             polypeptide 6 (RNA helicase, 54kD)) pseudogene, STSs and
             GSSs, complete sequence
          Length = 97392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacgagttgctgcagtttcttt 112
             ||||||||||| ||||||||||||
Sbjct: 61819 cacacgagttgatgcagtttcttt 61842
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>gb|U72096.1|HIVU72096 HIV-1 clone pMCE31.3 from Canada, 5' long terminal repeat, partial
           sequence
          Length = 412

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 11  caagagaagatagaagaggc 30
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>gb|U72095.1|HIVU72095 HIV-1 clone pMCE31.1 from Canada, 5' long terminal repeat, partial
           sequence
          Length = 413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 11  caagagaagatagaagaggc 30
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>gb|AY856764.1| HIV-1 isolate 4035 from France nef protein (nef) gene, complete cds
          Length = 618

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 448 caagagaagatagaagaggc 467
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>dbj|AP004498.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT06A20, TM0030,
            complete sequence
          Length = 82599

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cttcttgtaaactgcattct 63
            ||||||||||||||||||||
Sbjct: 1582 cttcttgtaaactgcattct 1601
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>gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding protein mRNA, complete
           cds
          Length = 844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 ccagacttgtctgtttcctc 298
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474
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>gb|U26137.1|HIV1U26137 Human immunodeficiency virus type 1 patient 50495 clone 8 nef
           protein (nef) gene, complete cds
          Length = 624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 caagagaagatagaagaggc 155
           ||||||||||||||||||||
Sbjct: 454 caagagaagatagaagaggc 473
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>emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2273N11 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 119296

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   aaatttgttgccttgtattt 221
             ||||||||||||||||||||
Sbjct: 31626 aaatttgttgccttgtattt 31645
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>emb|AL133223.5|CNS01DU8 Human chromosome 14 DNA sequence BAC R-114H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 140292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   aaatttgttgccttgtattt 221
             ||||||||||||||||||||
Sbjct: 31023 aaatttgttgccttgtattt 31004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,770,232
Number of Sequences: 3902068
Number of extensions: 4770232
Number of successful extensions: 91407
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91253
Number of HSP's gapped (non-prelim): 154
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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