ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05c01 |
|---|---|
| Clone Library Name | barley_pub |
>AMYB_BACCI (P06547) Beta-amylase precursor (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 575 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 62 SSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLH-GIINLALHR 190 S PTD D + + G + T G+ SW ++ H G+I A H+ Sbjct: 259 SPPTDSDGFYTGGGYNITYGKDFLSWYQSVLENHLGVIGAAAHK 302
>AMYB_PAEPO (P21543) Beta/alpha-amylase precursor [Includes: Beta-amylase (EC| 3.2.1.2); Alpha-amylase (EC 3.2.1.1)] Length = 1196 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +2 Query: 50 LPNTSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLH-GIINLALHR 190 L + PTD D + + G + G+ SW ++ H G+I A H+ Sbjct: 254 LSQINPPTDGDGFYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHK 301
>AMYB_BACFI (P96513) Beta-amylase precursor (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) (Fragment) Length = 468 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +2 Query: 50 LPNTSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLH-GIINLALHR 190 L + PTD D + + G + G+ SW ++ H G+I A H+ Sbjct: 254 LSQINPPTDGDGFYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHK 301
>SPIKE_CVMA5 (P11224) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1324 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = +2 Query: 47 ELPNTSSPT------DPDAYSSQGLFKETTGRQITSWPTTLPTLHGIIN 175 +LPNT T D + QG+FKE SW T L ++G +N Sbjct: 569 QLPNTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLN 617
>NPCL1_MOUSE (Q6T3U4) Niemann-Pick C1-like protein 1 precursor| Length = 1333 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 47 ELPNTSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLHGIINLAL 184 E PN ++ G F E+ G ++ SWP T+ L I+ +AL Sbjct: 321 EAPNLPRKRRFSPHTVLGRFFESWGTRVASWPLTVLALSFIVVIAL 366
>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex combs)| Length = 1368 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +2 Query: 23 KFSTER*GELP--NTSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLHGIINL 178 K ST G L NTSS + + S G T+ R +T PTT+ + +N+ Sbjct: 1229 KVSTSNPGSLSPTNTSSSSSSSSSGSSGCSAATSPRAMTKKPTTIDQVAANLNI 1282
>HXB3_CHICK (P23682) Homeobox protein Hox-B3 (Chox-2.7)| Length = 399 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%) Frame = +2 Query: 56 NTSSPTDPDAYSSQGLFKETT----------GRQITSWPTTLPTLHGIINLALHRANHHI 205 NT+ DP G+ T G + S PT+ P+L+G+ +L H+A + Sbjct: 293 NTAPEYDPHVLQGNGVAYGTPSMQGSPVYVGGNYVDSLPTSGPSLYGLNHLPHHQAANMD 352 Query: 206 YTQP 217 Y+ P Sbjct: 353 YSGP 356
>PODXL_MOUSE (Q9R0M4) Podocalyxin-like protein 1 precursor| Length = 503 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = +2 Query: 59 TSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLHGIINLALH----RANHHIYTQPTWS 226 TSSP+ SS G + G+ S+ T T G+IN++ + + PT Sbjct: 107 TSSPSSTAFTSSSGQTASSGGKSGDSFTTAPTTTLGLINVSSQPTDLNTTSKLLSTPTTD 166 Query: 227 TTTKP 241 TT P Sbjct: 167 NTTSP 171
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Frame = +2 Query: 56 NTSSPTDPDAYSSQGLFKETTGRQITSWPTTLPTLHGIINLALHRANHHI------YTQP 217 +T SPT SS Q TS PTTLPT + + A HI T P Sbjct: 1389 STVSPTTSTPISSTP--------QPTSSPTTLPTTSPLTSSATSPTTSHITSTVSPTTSP 1440 Query: 218 TWSTTT 235 T STT+ Sbjct: 1441 TTSTTS 1446
>REGQ_LAMBD (P03047) Antitermination protein Q| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +2 Query: 209 TQPTWSTTTKPYY 247 TQPTWS T KP Y Sbjct: 172 TQPTWSRTVKPLY 184
>REGQ_BPPS3 (O80286) Antitermination protein (Protein gp23)| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +2 Query: 209 TQPTWSTTTKPYY 247 TQPTWS T KP Y Sbjct: 172 TQPTWSRTVKPLY 184
>REGQ_BPP22 (P57020) Antitermination protein (Protein gp23)| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +2 Query: 209 TQPTWSTTTKPYY 247 TQPTWS T KP Y Sbjct: 172 TQPTWSRTVKPLY 184
>REGQ_BPHK0 (Q02582) Antitermination protein| Length = 207 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +2 Query: 209 TQPTWSTTTKPYY 247 TQPTWS T KP Y Sbjct: 172 TQPTWSRTVKPLY 184
>YEF3_YEAST (P32618) Hypothetical 106.1 kDa protein in GLY1-GDA1 intergenic| region Length = 956 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +1 Query: 103 VQGNNRQANNFLADDATNITRHNKLSFT------QG*SSYIHPANMEHNNKALL 246 + NN+ NN AD A + HN +S++ Q SS + + +N+++L Sbjct: 528 ISNNNKSINNSNADSAPPLRLHNPVSYSPSNEPIQPSSSLLSQLTQDTDNRSML 581 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,202,252 Number of Sequences: 219361 Number of extensions: 1039507 Number of successful extensions: 2769 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2768 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
