ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain ... 31 0.68
2BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain ... 30 1.2
3V119_ASFL5 (P26703) LIS 119-1 protein precursor 30 1.5
4HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog pr... 30 2.0
5HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor ... 30 2.0
6LUXS_STAES (Q8CNI0) S-ribosylhomocysteine lyase (EC 4.4.1.21) (A... 28 4.4
7LUXS_STAEQ (Q5HM88) S-ribosylhomocysteine lyase (EC 4.4.1.21) (A... 28 4.4
8NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplas... 28 5.7
9HFE_RHIUN (Q9GL41) Hereditary hemochromatosis protein homolog pr... 27 9.8
10HFE_DICSU (Q9GL42) Hereditary hemochromatosis protein homolog pr... 27 9.8
11HFE_DICBI (Q9GL43) Hereditary hemochromatosis protein homolog pr... 27 9.8
12HFE_CERSI (Q9GKZ0) Hereditary hemochromatosis protein homolog pr... 27 9.8
13TRPB1_ARATH (P14671) Tryptophan synthase beta chain 1, chloropla... 27 9.8
14VP3_BTV2A (Q65748) VP3 core protein (Major inner capsid protein) 27 9.8
15VP3_BTV1S (P56582) VP3 core protein (Major inner capsid protein) 27 9.8
16VP3_BTV1A (P20608) VP3 core protein (Major inner capsid protein) 27 9.8
17VP3_BTV17 (P03539) VP3 core protein (Major inner capsid protein) 27 9.8
18VP3_BTV11 (Q65749) VP3 core protein (Major inner capsid protein) 27 9.8
19VP3_BTV10 (P12435) VP3 core protein (Major inner capsid protein) 27 9.8

>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A|
           (Transcription termination factor I-interacting protein
           5) (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 182 HLVFRGSMSTAPSSSSRLHHTNHSIASTHPLWNLQQQNSPPPGSLL 319
           H    G +++AP SSS   H +H   +   LWN  Q  S  PGS L
Sbjct: 66  HTTTSGILNSAPHSSST-SHLHHPSVAYDCLWNYSQYPSANPGSNL 110



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>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A|
           (Transcription termination factor I-interacting protein
           5) (TTF-I-interacting protein 5) (Tip5)
          Length = 1850

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 182 HLVFRGSMSTAP--SSSSRLHHTNHSIASTHPLWNLQQQNSPPPGSLL 319
           H    G +++AP  SS+S LHH N    +   LWN  Q  S  PG+ L
Sbjct: 24  HTTTSGILNSAPHSSSTSHLHHPN---VAYDCLWNYSQYPSANPGNNL 68



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>V119_ASFL5 (P26703) LIS 119-1 protein precursor|
          Length = 119

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 169 NYVHTLSVQRKYVNCSFFLEPPSPYKSFHCFNSPIM 276
           +Y+   S+ R +  C +F++P SPY  +   + PI+
Sbjct: 78  DYISQCSIARYFDRCMYFIKPKSPYIHYMDCSQPIV 113



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>HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog precursor|
           (HLA-H)
          Length = 348

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R   L ++
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYY 231



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>HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor (HLA-H)|
          Length = 348

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C  ++ QLL L R     Q+ PL+++TH+ T S  T R   L ++
Sbjct: 187 CPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYY 231



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>LUXS_STAES (Q8CNI0) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2|
           production protein luxS) (AI-2 synthesis protein)
          Length = 156

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
 Frame = -1

Query: 317 AKNQVAASFAAEGSIMG----------ELKQWNDLYGEG 231
           A N+V   +AA  S+ G          + +QWND+YGEG
Sbjct: 117 ACNEVQCGWAASHSLEGAKTIAQAFLDKREQWNDIYGEG 155



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>LUXS_STAEQ (Q5HM88) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2|
           production protein luxS) (AI-2 synthesis protein)
          Length = 156

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)
 Frame = -1

Query: 317 AKNQVAASFAAEGSIMG----------ELKQWNDLYGEG 231
           A N+V   +AA  S+ G          + +QWND+YGEG
Sbjct: 117 ACNEVQCGWAASHSLEGAKTIAQAFLDKREQWNDIYGEG 155



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>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 231  RLEEEGAVDILPLNTKCMNIIWKVE*MANNYEKIGRLLCQNT*KDSLSP 85
            RL  E A+D  PLNTK +N+  + E    +Y +   L  +    D LSP
Sbjct: 1039 RLLFERALDAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSP 1087



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>HFE_RHIUN (Q9GL41) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231



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>HFE_DICSU (Q9GL42) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231



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>HFE_DICBI (Q9GL43) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231



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>HFE_CERSI (Q9GKZ0) Hereditary hemochromatosis protein homolog precursor|
          Length = 348

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 189 CSEEVCQLLLLPRAAFTIQIIPLLQLTHYGTFSSKTRRHLVLCFF 323
           C E++  LL L R     Q+ PL+++TH+   +  T R   L F+
Sbjct: 187 CPEQLQWLLELGRGVLDQQVPPLVKVTHHVASAVTTLRCQALNFY 231



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>TRPB1_ARATH (P14671) Tryptophan synthase beta chain 1, chloroplast precursor|
           (EC 4.2.1.20)
          Length = 470

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 191 FRGSMSTAPSSSSRLHH 241
           FR S+S+APSSSS+L H
Sbjct: 10  FRASVSSAPSSSSQLTH 26



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>VP3_BTV2A (Q65748) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429



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>VP3_BTV1S (P56582) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429



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>VP3_BTV1A (P20608) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429



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>VP3_BTV17 (P03539) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429



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>VP3_BTV11 (Q65749) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429



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>VP3_BTV10 (P12435) VP3 core protein (Major inner capsid protein)|
          Length = 901

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   KDLLCSADSLLVYKYNNQTQANYSLRGDRLSFHV 109
           + L  + +  L+Y YN + Q NY   G+ L F +
Sbjct: 396 RQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQI 429


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,986,215
Number of Sequences: 219361
Number of extensions: 896209
Number of successful extensions: 2350
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2344
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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