Clone Name | rbastl05b09 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_187916.1| Oryza sativa (japonica cultivar-group), Ozsa8358 predicted mRNA Length = 3594 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 346 tcaccaaactgaatgccagtaggaggatgcatgttgaaaacgtaagcgactggtgcagat 405 ||||||||||||||||||||||||||||||||| | || | |||||| |||||||| ||| Sbjct: 3554 tcaccaaactgaatgccagtaggaggatgcatgctaaagatgtaagcaactggtgctgat 3495 Query: 406 a 406 | Sbjct: 3494 a 3494
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 346 tcaccaaactgaatgccagtaggaggatgcatgttgaaaacgtaagcgactggtgcagat 405 ||||||||||||||||||||||||||||||||| | || | |||||| |||||||| ||| Sbjct: 135201 tcaccaaactgaatgccagtaggaggatgcatgctaaagatgtaagcaactggtgctgat 135260 Query: 406 a 406 | Sbjct: 135261 a 135261
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 346 tcaccaaactgaatgccagtaggaggatgcatgttgaaaacgtaagcgactggtgcagat 405 ||||||||||||||||||||||||||||||||| | || | |||||| |||||||| ||| Sbjct: 8560048 tcaccaaactgaatgccagtaggaggatgcatgctaaagatgtaagcaactggtgctgat 8560107 Query: 406 a 406 | Sbjct: 8560108 a 8560108
>dbj|AK111789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092H03, full insert sequence Length = 1817 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 346 tcaccaaactgaatgccagtaggaggatgcatgttgaaaacgtaagcgactggtgcagat 405 ||||||||||||||||||||||||||||||||| | || | |||||| |||||||| ||| Sbjct: 1575 tcaccaaactgaatgccagtaggaggatgcatgctaaagatgtaagcaactggtgctgat 1516 Query: 406 a 406 | Sbjct: 1515 a 1515
>dbj|AK100311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K23, full insert sequence Length = 3500 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 346 tcaccaaactgaatgccagtaggaggatgcatgttgaaaacgtaagcgactggtgcagat 405 ||||||||||||||||||||||||||||||||| | || | |||||| |||||||| ||| Sbjct: 3077 tcaccaaactgaatgccagtaggaggatgcatgctaaagatgtaagcaactggtgctgat 3018 Query: 406 a 406 | Sbjct: 3017 a 3017
>gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, complete sequence Length = 148977 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 aataaagttaaaatcagttaag 126 |||||||||||||||||||||| Sbjct: 4813 aataaagttaaaatcagttaag 4792
>ref|XM_980774.1| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor type 3 (Ptpn3), mRNA Length = 6723 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aactaggctctgcataaggct 324 ||||||||||||||||||||| Sbjct: 3959 aactaggctctgcataaggct 3979
>ref|XM_485383.4| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor type 3, transcript variant 1 (Ptpn3), mRNA Length = 6723 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aactaggctctgcataaggct 324 ||||||||||||||||||||| Sbjct: 3959 aactaggctctgcataaggct 3979
>ref|XM_921203.2| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor type 3, transcript variant 6 (Ptpn3), mRNA Length = 6284 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aactaggctctgcataaggct 324 ||||||||||||||||||||| Sbjct: 3520 aactaggctctgcataaggct 3540
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 aaggctttgcgcagctccgtt 339 ||||||||||||||||||||| Sbjct: 2034302 aaggctttgcgcagctccgtt 2034282
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 aaggctttgcgcagctccgtt 339 ||||||||||||||||||||| Sbjct: 1909320 aaggctttgcgcagctccgtt 1909300
>dbj|AK035295.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530011I20 product:unclassifiable, full insert sequence Length = 2414 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 aactaggctctgcataaggct 324 ||||||||||||||||||||| Sbjct: 1781 aactaggctctgcataaggct 1801
>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete sequence Length = 162090 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 aactaggctctgcataaggct 324 ||||||||||||||||||||| Sbjct: 53805 aactaggctctgcataaggct 53785
>emb|AL713854.9| Mouse DNA sequence from clone RP23-477E1 on chromosome 8, complete sequence Length = 169876 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 ccaaaccaacatctgaccttctgaa 30 |||||||||| |||||||||||||| Sbjct: 73408 ccaaaccaacttctgaccttctgaa 73432
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence Length = 168316 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 agttaaaatcagttaagctgaaac 133 ||||||||||| |||||||||||| Sbjct: 56968 agttaaaatcaattaagctgaaac 56945
>emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chromosome 16, complete sequence Length = 169798 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 atttccaaaccaacatctga 21 |||||||||||||||||||| Sbjct: 17498 atttccaaaccaacatctga 17479
>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence Length = 222348 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 atttccaaaccaacatctga 21 |||||||||||||||||||| Sbjct: 99312 atttccaaaccaacatctga 99331
>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), a 40S ribosomal protein S12 (RPS12) pseudogene and a 60S ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 176405 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ggatgcatgttgaaaacgta 389 |||||||||||||||||||| Sbjct: 161620 ggatgcatgttgaaaacgta 161601
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence Length = 167209 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 agttaaaatcagttaagctgaaac 133 ||||||||||| |||||||||||| Sbjct: 84366 agttaaaatcaattaagctgaaac 84389
>emb|AL133279.7|CNS01DUM Human chromosome 14 DNA sequence BAC R-753D20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ttaccaaaagatcacagcac 253 |||||||||||||||||||| Sbjct: 85382 ttaccaaaagatcacagcac 85363
>gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, complete sequence Length = 197813 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 tgagaataaagttaaaatca 120 |||||||||||||||||||| Sbjct: 15682 tgagaataaagttaaaatca 15701 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,056,296 Number of Sequences: 3902068 Number of extensions: 3056296 Number of successful extensions: 50598 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50529 Number of HSP's gapped (non-prelim): 69 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)