>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 168
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 138
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133

>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog|
           B)
          Length = 269

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDH 150
           +  R+   PE ++L      TPTQ    F +HR+  K+A + KG+   H
Sbjct: 145 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTH 193

>HISX_BLOFL (Q7VQX0) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 437

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 157 RCNDLSQLPSMMRPFLTKNGGVRIDVKFVL 68
           RC+   QL  + RP    N  + +DVK++L
Sbjct: 14  RCSISEQLTLLTRPINKHNNSIHLDVKYIL 43

>FDHE_AQUAE (O67150) Protein fdhE homolog|
          Length = 283

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 131 FHDEAFFDKKRWCKNRCEVC 72
           F D+  F+ +RW KN C VC
Sbjct: 151 FADKVKFEHERWFKNYCPVC 170

>RL1D1_PONPY (Q5RCE6) Ribosomal L1 domain-containing protein 1|
          Length = 490

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 252 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 145
           N +K KER +KR+ ARK+   L  D     SGD  +
Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330

>RL1D1_HUMAN (O76021) Ribosomal L1 domain-containing protein 1 (Cellular|
           senescence-inhibited gene protein) (PBK1 protein)
           (CATX-11)
          Length = 490

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 252 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 145
           N +K KER +KR+ ARK+   L  D     SGD  +
Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330

>NKX22_MOUSE (P42586) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 138
           +  R+   PE ++L      TPTQ    F +HR+  K+A + KG+
Sbjct: 148 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGM 192

>NKX22_MESAU (P43697) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 138
           +  R+   PE ++L      TPTQ    F +HR+  K+A + KG+
Sbjct: 148 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGM 192

>NKX22_HUMAN (O95096) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)|
          Length = 273

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 16  KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 138
           +  R+   PE ++L      TPTQ    F +HR+  K+A + KG+
Sbjct: 148 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGM 192

>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 377

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 321 CRVGGPLCQ---FHTTGTVG**RCFYNVQKIKERDEKRKIARK 202
           C VGGP CQ   F     VG     Y +Q+ K   EK+ ++ K
Sbjct: 135 CGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDK 177

>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I|
           restriction enzyme R protein)
          Length = 929

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 119 AFFDKKRWCKNRCEV 75
           +F DKK WCKN+ +V
Sbjct: 95  SFLDKKSWCKNKFQV 109

>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I|
           restriction enzyme R protein)
          Length = 929

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 119 AFFDKKRWCKNRCEV 75
           +F DKK WCKN+ +V
Sbjct: 95  SFLDKKSWCKNKFQV 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,095,078
Number of Sequences: 219361
Number of extensions: 765144
Number of successful extensions: 2054
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2054
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)