>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)|
           (RNA polymerase I subunit 2)
          Length = 1234

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 351 SDCGMRLSSPHRCKIFISSPSTAVVWRFSFDTTQHSIIHESTEWTGPTTHNRRI--WCT 181
           S CG+     H+CKI   S   + + R +F+    +I   +T  +     + RI  WCT
Sbjct: 543 SPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVNISSAATSESVVVMLDGRIVGWCT 601

>PHF20_MOUSE (Q8BLG0) PHD finger protein 20 (Hepatocellular carcinoma-associated|
           antigen 58 homolog)
          Length = 1010

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 122 NCPFLLESTRQTEPVSTMSTVHQIRRLWVVGPVHSVD 232
           NC  + E+T +TEPVS ++ V ++  + V   +  VD
Sbjct: 403 NCKSMGENTMKTEPVSPLAEVQEVSTVEVPNTLKKVD 439

>RPOB_MYCPU (Q98Q23) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1216

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 29  KEATASNKFSYIRPNNSC*NRYRKTTLVQPFNCPFLLESTRQTEPVSTMSTVHQIRRL 202
           +E  +S + S I P N   N+  +  +   FN   L +   QT P+S +ST  +I  L
Sbjct: 474 REKMSSKEISRITPKNITNNKMIQNQIKTFFNSSKLSQFMDQTNPLSEISTKRKITSL 531

>GDA1_KLULA (Q9HEM6) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase)|
          Length = 522

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 396 HQKQNHLGSSNSMNESDCGMRLSSPHRCKIFISSPSTAV---VWRFSFDTTQHSIIHEST 226
           H  QN    SNS+++S C    +  H+  + I + ST     V+ F   T   ++I+E+ 
Sbjct: 74  HTSQNLESGSNSLSKSQC----TEGHKYVVMIDAGSTGSRVHVYEFDVCTQPPTLINETF 129

Query: 225 EWTGP 211
           E   P
Sbjct: 130 EMLKP 134

>ZN131_PONPY (Q5RAU9) Zinc finger protein 131|
          Length = 589

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/71 (25%), Positives = 39/71 (54%)
 Frame = +2

Query: 137 LESTRQTEPVSTMSTVHQIRRLWVVGPVHSVDS*IMECCVVSKEKRHTTAVLGEEINILH 316
           +E+  QTEPV++M+ + Q+ ++ V+ P+  V    ++   V+ E+ H   + G +++  H
Sbjct: 423 VETRVQTEPVTSMTIIEQVGKVHVL-PLLQVQ---VDSAQVTVEQVHPDLLQGSQVHDSH 478

Query: 317 R*GLDSRIPQS 349
              L  ++  S
Sbjct: 479 MSELPEQVQVS 489

>Y2081_STRA5 (Q8DWY0) UPF0246 protein SAG2081|
          Length = 243

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 339 MRLSSPHRC----KIFISSPSTAVVWRFSFDTTQHS 244
           M L SPHR     KI I++ S  V WR ++DT   S
Sbjct: 115 MTLISPHRLDFNTKIKINNNSLKVFWRENYDTFMQS 150

>Y2036_STRA3 (Q8E2T1) UPF0246 protein gbs2036|
          Length = 243

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 339 MRLSSPHRC----KIFISSPSTAVVWRFSFDTTQHS 244
           M L SPHR     KI I++ S  V WR ++DT   S
Sbjct: 115 MTLISPHRLDFNTKIKINNNSLKVFWRENYDTFMQS 150

>POLN_ONNVS (O90368) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.
          Length = 2513

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 278  CGVFLLTQHSIP*FMSQRSGQDPQPIIVGSGVPXXXXXLAQFAL*IQARTDN*MAVP 108
            C   LL  H++P  +S R+ +    II    +P      AQF   +Q+ TD  + VP
Sbjct: 1638 CSKALLFDHNVPSRVSPRTYRPADEIIQTPQIPTEACQDAQF---VQSITDEAVPVP 1691

>YO67_CAEEL (P34748) Hypothetical protein ZK1098.7|
          Length = 133

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 201 YGLWVLSTPLTHELWNAVLCQKKNATQRLYWVRR*IFYTDEDLTVAFHSQIHSCCSMTLD 380
           Y ++V S PLT   WN  L +            R IFY ++ L   F+    S   + +D
Sbjct: 36  YDVYVSSPPLTPPDWNVKLAKYDEPI-------RSIFYEEDVLRAKFYKTYRSTAGIQVD 88

Query: 381 DFVSDVFQ 404
              + V Q
Sbjct: 89  SSRTSVSQ 96

>RPN2_MOUSE (Q9DBG6) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II)
          Length = 631

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -2

Query: 309 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 169
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>RIB2_RAT (P25235) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II)
          Length = 631

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -2

Query: 309 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 169
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>RIB2_HUMAN (P04844) Dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 63 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin II) (RPN-II) (RIBIIR)
          Length = 631

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = -2

Query: 309 IFISSPSTAVVWRFSFDTTQHSIIHESTEWT--------GPTTHNRRIWCTVDIV 169
           +F++ P    V++F  DT++  I  +S   T          T  N  +W   D+V
Sbjct: 448 VFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVV 502

>TL15_ARATH (O22160) Thylakoid lumenal 15 kDa protein, chloroplast precursor|
           (p15)
          Length = 224

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 369 SNSMNESDCGMRLSSPHRCKIFISSPSTAVVWRFSFDTTQHSI 241
           S S   S C +R S     K  ++SP  +VVW    + ++ S+
Sbjct: 23  SPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSL 65

>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding|
            cassette sub-family C member 6)
          Length = 1498

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +3

Query: 42   HQTSSVTSGQITVVETGTERLLWYSHLIVRSCLNLQGKLSQCQQCQRYTRSDDYGLWVLS 221
            H ++ +    ++     T+ L W    +VRS  +L+  +   ++ Q Y R      W L 
Sbjct: 1191 HLSAGLVGFSVSAALQVTQTLQW----VVRSWTDLENSMVAVERVQDYARIPKEAPWRLP 1246

Query: 222  TPLTHELW 245
            T     LW
Sbjct: 1247 TCAAQPLW 1254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,075,446
Number of Sequences: 219361
Number of extensions: 1177418
Number of successful extensions: 2823
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2823
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)