>gb|AY104666.1| Zea mays PCO121749 mRNA sequence
          Length = 827

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 376 tagatgattttgtttctgatgtcttccagct 406
           |||||||||||||| ||||||||||| ||||
Sbjct: 352 tagatgattttgttcctgatgtcttctagct 322

>ref|NM_177419.1| Rattus norvegicus X-ray repair complementing defective repair in
           Chinese hamster cells 5 (Xrcc5), mRNA
          Length = 2548

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 395 gattttgtttccgatgtcttccagc 371

>gb|AC130528.4| Mus musculus BAC clone RP23-122M14 from chromosome 6, complete sequence
          Length = 208738

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    gaaacaggtacagaaagacta 104
             |||||||||||||||||||||
Sbjct: 65572 gaaacaggtacagaaagacta 65552

>gb|BC061576.1| Rattus norvegicus X-ray repair complementing defective repair in
           Chinese hamster cells 5, mRNA (cDNA clone MGC:72979
           IMAGE:6887693), complete cds
          Length = 2548

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 395 gattttgtttccgatgtcttccagc 371

>ref|NM_009533.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5 (Xrcc5), mRNA
          Length = 2455

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 321 gattttgtttccgatgtcttccagc 297

>gb|BC051660.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5, mRNA (cDNA clone MGC:60964
           IMAGE:30008031), complete cds
          Length = 2500

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 360 gattttgtttccgatgtcttccagc 336

>gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete sequence
          Length = 31549

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   tgtgttgtgtcaaaagaaaaa 271
             |||||||||||||||||||||
Sbjct: 25190 tgtgttgtgtcaaaagaaaaa 25210

>emb|X66323.1|MMP80KUAG M.musculus mRNA for p80 Ku autoantigen
          Length = 2515

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 321 gattttgtttccgatgtcttccagc 297

>dbj|AK165470.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F530012I09 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2523

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 388 gattttgtttccgatgtcttccagc 364

>dbj|AK168913.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920064P22 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285

>dbj|AK169838.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430034L10
           product:X-ray repair complementing defective repair in
           Chinese hamster cells 5, full insert sequence
          Length = 2140

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285

>dbj|AK167312.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
           library, clone:I530003F18 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285

>dbj|AK010416.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410005I23 product:X-ray repair complementing
           defective repair in Chinese hamster cells 5, full insert
           sequence
          Length = 866

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 309 gattttgtttccgatgtcttccagc 285

>dbj|AK081633.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130057J09 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 421 gattttgtttccgatgtcttccagc 397

>gb|BC029218.1| Mus musculus X-ray repair complementing defective repair in Chinese
           hamster cells 5, mRNA (cDNA clone IMAGE:2647262),
           partial cds
          Length = 2446

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 292 gattttgtttccgatgtcttccagc 268

>ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, class J family member
           (srj-37) (srj-37) mRNA, complete cds
          Length = 1002

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 tgtgttgtgtcaaaagaaaaa 271
           |||||||||||||||||||||
Sbjct: 927 tgtgttgtgtcaaaagaaaaa 947

>dbj|AK089944.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN full-length
           enriched library, clone:G430020C23 product:X-ray repair
           complementing defective repair in Chinese hamster cells
           5, full insert sequence
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 417 gattttgtttccgatgtcttccagc 393

>dbj|AK182445.1| Mus musculus cDNA, clone:Y0G0122A02, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000027379, based on BLAT search
          Length = 434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 283 gattttgtttccgatgtcttccagc 259

>gb|AC114905.10| Mus musculus chromosome 1, clone RP24-127K21, complete sequence
          Length = 168918

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 381   gattttgtttctgatgtcttccagc 405
             ||||||||||| |||||||||||||
Sbjct: 90697 gattttgtttccgatgtcttccagc 90673

>gb|AF166486.1|AF166486 Mus musculus Ku autoantigen (Ku80) mRNA, complete cds
          Length = 2257

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 315 gattttgtttccgatgtcttccagc 291

>dbj|AB066103.1| Rattus norvegicus mRNA for Xrcc5, partial cds
          Length = 2100

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 381 gattttgtttctgatgtcttccagc 405
           ||||||||||| |||||||||||||
Sbjct: 149 gattttgtttccgatgtcttccagc 125

>gb|AC011894.3| Homo sapiens BAC clone RP11-52M17 from 7, complete sequence
          Length = 24310

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  ttgcttgaatctacaaggca 153
            ||||||||||||||||||||
Sbjct: 8675 ttgcttgaatctacaaggca 8656

>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence
          Length = 146386

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   atgattttgtttctgatgtc 398
             ||||||||||||||||||||
Sbjct: 68157 atgattttgtttctgatgtc 68176

>emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on chromosome 9q21.12-21.32
            Contains a DnaJ (Hsp40) homolog subfamily B member 5
            (DNAJB5) pseudogene, a lysophospholipase II (LYPLA2)
            pseudogene, an eukaryotic translation initiation factor 3
            subunit 1 35kDa (EIF3S1) pseudogene, the gene (possible
            pseudogene) for a novel protein similar to forkhead box
            B1 (FOXB1), ATP synthase H+ transporting mitochondrial F0
            complex subunit f isoform 2 (ATP5J2) pseudogene and three
            CpG islands, complete sequence
          Length = 146466

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  ttgcttgaatctacaaggca 153
            ||||||||||||||||||||
Sbjct: 6938 ttgcttgaatctacaaggca 6957

>gb|AC022613.13| Homo sapiens chromosome 15, clone RP11-680F8, complete sequence
          Length = 188117

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   gattttgtttctgatgtctt 400
             ||||||||||||||||||||
Sbjct: 97367 gattttgtttctgatgtctt 97348

>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   tgttgtgtcaaaagaaaaac 272
             ||||||||||||||||||||
Sbjct: 42575 tgttgtgtcaaaagaaaaac 42556

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 18      gatgcatcaggaaagaagcc 37
               ||||||||||||||||||||
Sbjct: 6370335 gatgcatcaggaaagaagcc 6370354

>gb|DQ015919.1| Homo sapiens tight junction protein 1 (zona occludens 1) (TJP1) gene,
             complete cds
          Length = 125625

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   gattttgtttctgatgtctt 400
             ||||||||||||||||||||
Sbjct: 81935 gattttgtttctgatgtctt 81954

>gb|AC146064.4| Pan troglodytes BAC clone RP43-59B14 from chromosome 7, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ttgcttgaatctacaaggca 153
              ||||||||||||||||||||
Sbjct: 134992 ttgcttgaatctacaaggca 135011

>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1779_B07
          Length = 151427

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gatgcatcaggaaagaagcc 37
             ||||||||||||||||||||
Sbjct: 26902 gatgcatcaggaaagaagcc 26921

>gb|AC154435.2| Mus musculus BAC clone RP24-188N22 from chromosome 14, complete sequence
          Length = 173318

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    cttgacagtcgcattccaca 345
              ||||||||||||||||||||
Sbjct: 124495 cttgacagtcgcattccaca 124476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,043,795
Number of Sequences: 3902068
Number of extensions: 4043795
Number of successful extensions: 70203
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70120
Number of HSP's gapped (non-prelim): 83
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)