ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 133 bits (67), Expect = 5e-28 Identities = 190/231 (82%) Strand = Plus / Minus Query: 173 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 232 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 21893717 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 21893658 Query: 233 ctggaaatagtcttgcaatgcaagaatcttaatggacttgttcttcatactcttgatggc 292 |||||| || ||||||||||| ||| ||| ||| || |||||||||| || ||||| || Sbjct: 21893657 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 21893598 Query: 293 gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 352 || |||||||| || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 21893597 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 21893538 Query: 353 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagct 403 | ||||| ||||||||||||||| | |||||||| |||| |||||||| Sbjct: 21893537 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagct 21893487
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1114B07 Length = 148060 Score = 133 bits (67), Expect = 5e-28 Identities = 190/231 (82%) Strand = Plus / Minus Query: 173 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 232 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 123010 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 122951 Query: 233 ctggaaatagtcttgcaatgcaagaatcttaatggacttgttcttcatactcttgatggc 292 |||||| || ||||||||||| ||| ||| ||| || |||||||||| || ||||| || Sbjct: 122950 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 122891 Query: 293 gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 352 || |||||||| || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 122890 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 122831 Query: 353 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagct 403 | ||||| ||||||||||||||| | |||||||| |||| |||||||| Sbjct: 122830 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagct 122780
>dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D04, full insert sequence Length = 1096 Score = 133 bits (67), Expect = 5e-28 Identities = 190/231 (82%) Strand = Plus / Minus Query: 173 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 232 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 994 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 935 Query: 233 ctggaaatagtcttgcaatgcaagaatcttaatggacttgttcttcatactcttgatggc 292 |||||| || ||||||||||| ||| ||| ||| || |||||||||| || ||||| || Sbjct: 934 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 875 Query: 293 gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 352 || |||||||| || || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 874 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 815 Query: 353 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagct 403 | ||||| ||||||||||||||| | |||||||| |||| |||||||| Sbjct: 814 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagct 764
>ref|XM_463327.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3279 Score = 127 bits (64), Expect = 3e-26 Identities = 163/196 (83%) Strand = Plus / Minus Query: 208 gcaacttctgtggtgcatcagcaggctggaaatagtcttgcaatgcaagaatcttaatgg 267 |||| ||||| | |||||| | || |||||| || ||||||||||| ||| ||| ||| | Sbjct: 3256 gcaagttctgggatgcatctgtagtctggaagtaatcttgcaatgcgagagtctcaattg 3197 Query: 268 acttgttcttcatactcttgatggcgtccatggtagcccgagcaccatccacggttgtaa 327 | |||||||||| || ||||| || || |||||||| || || ||||||||||| |||| Sbjct: 3196 atttgttcttcaagcttttgatagcatcgatggtagcacgcgccccatccacggtagtaa 3137 Query: 328 ttatggggaccttgtaggccagggctagcctgcgcagctggaggccatctctcgagtcaa 387 |||| |||||||||||||||||||| | ||||| ||||||||||||||| | ||||||| Sbjct: 3136 ttatcgggaccttgtaggccagggccaatctgcggagctggaggccatctttggagtcaa 3077 Query: 388 ggtcatcgcctgagct 403 | |||| |||||||| Sbjct: 3076 gagcatcacctgagct 3061
>gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosphate synthase large subunit-like gene, partial sequence Length = 818 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 336 accttgtaggccagggctagcctgcgcagctggaggccatctctcgagtcaaggtcatcg 395 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 799 accttgtaggccagagctagcctacgcagctggaggccatctctcgagtcaaggtcatcg 740 Query: 396 cctgagcttg 405 || ||||||| Sbjct: 739 ccagagcttg 730
>gb|AY108969.1| Zea mays PCO147581 mRNA sequence Length = 637 Score = 71.9 bits (36), Expect = 2e-09 Identities = 147/184 (79%) Strand = Plus / Minus Query: 222 gcatcagcaggctggaaatagtcttgcaatgcaagaatcttaatggacttgttcttcata 281 ||||| |||| |||||| || |||||||| || || |||| ||| ||||||| ||||| Sbjct: 297 gcatcggcagtctggaagtaatcttgcaaggcgaggatctcaatcgacttgtccttcaag 238 Query: 282 ctcttgatggcgtccatggtagcccgagcaccatccacggttgtaattatggggaccttg 341 ||||||||||| || |||| || || || || || |||||||| || || || |||||| Sbjct: 237 ctcttgatggcatctatggaggcacgtgcgccgtcgacggttgtgataattggcaccttg 178 Query: 342 taggccagggctagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgag 401 ||||| ||||| ||||| || |||||||| || ||| | |||||||| |||| || ||| Sbjct: 177 taggcgagggcaagcctacgaagctggagaccgtctttggagtcaagagcatcaccagag 118 Query: 402 cttg 405 |||| Sbjct: 117 cttg 114
>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete sequence Length = 186045 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aataaagacattacatggaaa 158 ||||||||||||||||||||| Sbjct: 110194 aataaagacattacatggaaa 110214
>gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, complete sequence Length = 113368 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cagcaggctggaaatagtct 245 |||||||||||||||||||| Sbjct: 2058 cagcaggctggaaatagtct 2077
>gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, complete sequence Length = 105459 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttgttcttcatactcttgat 289 |||||||||||||||||||| Sbjct: 89901 ttgttcttcatactcttgat 89920
>emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1 on chromosome 6q22.2-23.1 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 120998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gctggaaatagtcttgcaat 251 |||||||||||||||||||| Sbjct: 64505 gctggaaatagtcttgcaat 64486
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tatcgcagcagcagataagc 98 |||||||||||||||||||| Sbjct: 1191289 tatcgcagcagcagataagc 1191270
>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186990 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gcagctggaggccatctctc 380 |||||||||||||||||||| Sbjct: 50639 gcagctggaggccatctctc 50658
>gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 197878 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gcagctggaggccatctctc 380 |||||||||||||||||||| Sbjct: 168684 gcagctggaggccatctctc 168665
>ref|NM_140296.2| Drosophila melanogaster CG5642-RA (CG5642), mRNA Length = 1856 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gcagctggaggccatctctc 380 |||||||||||||||||||| Sbjct: 766 gcagctggaggccatctctc 785
>gb|AY089607.1| Drosophila melanogaster RE21692 full insert cDNA Length = 1861 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gcagctggaggccatctctc 380 |||||||||||||||||||| Sbjct: 759 gcagctggaggccatctctc 778
>gb|AC103890.1| 16q24.3 clone, complete sequence Length = 129848 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cagcaggctggaaatagtct 245 |||||||||||||||||||| Sbjct: 8895 cagcaggctggaaatagtct 8876
>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence Length = 129785 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cagcaggctggaaatagtct 245 |||||||||||||||||||| Sbjct: 120891 cagcaggctggaaatagtct 120910
>gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence Length = 155498 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ttgttcttcatactcttgat 289 |||||||||||||||||||| Sbjct: 32039 ttgttcttcatactcttgat 32020
>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete sequence Length = 303022 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gcagctggaggccatctctc 380 |||||||||||||||||||| Sbjct: 136477 gcagctggaggccatctctc 136458
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 ttatggggaccttgtaggccaggg 351 ||||||||||| |||||||||||| Sbjct: 1599060 ttatggggaccgtgtaggccaggg 1599083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,286,923 Number of Sequences: 3902068 Number of extensions: 3286923 Number of successful extensions: 58849 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58790 Number of HSP's gapped (non-prelim): 59 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
